Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30541
(576 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X07862-1|CAA30710.1| 102|Homo sapiens protein ( Human mRNA for ... 31 2.2
Z46940-2|CAA87066.1| 102|Homo sapiens protamine 2 protein. 29 8.9
U15422-2|AAC50487.1| 102|Homo sapiens protamine 2 protein. 29 8.9
M60332-1|AAA63250.1| 102|Homo sapiens proatamine 2 protein. 29 8.9
BC066338-1|AAH66338.1| 102|Homo sapiens protamine 2 protein. 29 8.9
BC042671-1|AAH42671.1| 102|Homo sapiens protamine 2 protein. 29 8.9
BC005303-1|AAH05303.1| 102|Homo sapiens protamine 2 protein. 29 8.9
AK131573-1|BAD18705.1| 140|Homo sapiens protein ( Homo sapiens ... 29 8.9
AF215713-1|AAF34632.1| 102|Homo sapiens protamine 2 protein. 29 8.9
AB281137-1|BAF36638.1| 102|Homo sapiens protamine 2 protein. 29 8.9
>X07862-1|CAA30710.1| 102|Homo sapiens protein ( Human mRNA for
protamine 2. ).
Length = 102
Score = 31.5 bits (68), Expect = 2.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 249 HAQQQ*REAYCRRREPPSAHQFRYARCRWKSRNCSCKLHRGWRR 118
H Q Q R +C RR H+ ++ CR + R SC+ R RR
Sbjct: 48 HGQSQYRRRHCSRRRLHRIHRRQHRSCRRRKRR-SCRHRRRHRR 90
>Z46940-2|CAA87066.1| 102|Homo sapiens protamine 2 protein.
Length = 102
Score = 29.5 bits (63), Expect = 8.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 249 HAQQQ*REAYCRRREPPSAHQFRYARCRWKSRNCSCKLHRGWRR 118
H Q R +C RR H+ ++ CR + R SC+ R RR
Sbjct: 48 HGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRR-SCRHRRRHRR 90
>U15422-2|AAC50487.1| 102|Homo sapiens protamine 2 protein.
Length = 102
Score = 29.5 bits (63), Expect = 8.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 249 HAQQQ*REAYCRRREPPSAHQFRYARCRWKSRNCSCKLHRGWRR 118
H Q R +C RR H+ ++ CR + R SC+ R RR
Sbjct: 48 HGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRR-SCRHRRRHRR 90
>M60332-1|AAA63250.1| 102|Homo sapiens proatamine 2 protein.
Length = 102
Score = 29.5 bits (63), Expect = 8.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 249 HAQQQ*REAYCRRREPPSAHQFRYARCRWKSRNCSCKLHRGWRR 118
H Q R +C RR H+ ++ CR + R SC+ R RR
Sbjct: 48 HGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRR-SCRHRRRHRR 90
>BC066338-1|AAH66338.1| 102|Homo sapiens protamine 2 protein.
Length = 102
Score = 29.5 bits (63), Expect = 8.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 249 HAQQQ*REAYCRRREPPSAHQFRYARCRWKSRNCSCKLHRGWRR 118
H Q R +C RR H+ ++ CR + R SC+ R RR
Sbjct: 48 HGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRR-SCRHRRRHRR 90
>BC042671-1|AAH42671.1| 102|Homo sapiens protamine 2 protein.
Length = 102
Score = 29.5 bits (63), Expect = 8.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 249 HAQQQ*REAYCRRREPPSAHQFRYARCRWKSRNCSCKLHRGWRR 118
H Q R +C RR H+ ++ CR + R SC+ R RR
Sbjct: 48 HGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRR-SCRHRRRHRR 90
>BC005303-1|AAH05303.1| 102|Homo sapiens protamine 2 protein.
Length = 102
Score = 29.5 bits (63), Expect = 8.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 249 HAQQQ*REAYCRRREPPSAHQFRYARCRWKSRNCSCKLHRGWRR 118
H Q R +C RR H+ ++ CR + R SC+ R RR
Sbjct: 48 HGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRR-SCRHRRRHRR 90
>AK131573-1|BAD18705.1| 140|Homo sapiens protein ( Homo sapiens
cDNA FLJ16831 fis, clone TESTI2046536. ).
Length = 140
Score = 29.5 bits (63), Expect = 8.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 249 HAQQQ*REAYCRRREPPSAHQFRYARCRWKSRNCSCKLHRGWRR 118
H Q R +C RR H+ ++ CR + R SC+ R RR
Sbjct: 48 HGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRR-SCRHRRRHRR 90
>AF215713-1|AAF34632.1| 102|Homo sapiens protamine 2 protein.
Length = 102
Score = 29.5 bits (63), Expect = 8.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 249 HAQQQ*REAYCRRREPPSAHQFRYARCRWKSRNCSCKLHRGWRR 118
H Q R +C RR H+ ++ CR + R SC+ R RR
Sbjct: 48 HGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRR-SCRHRRRHRR 90
>AB281137-1|BAF36638.1| 102|Homo sapiens protamine 2 protein.
Length = 102
Score = 29.5 bits (63), Expect = 8.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 249 HAQQQ*REAYCRRREPPSAHQFRYARCRWKSRNCSCKLHRGWRR 118
H Q R +C RR H+ ++ CR + R SC+ R RR
Sbjct: 48 HGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRR-SCRHRRRHRR 90
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,862,637
Number of Sequences: 237096
Number of extensions: 1392067
Number of successful extensions: 3428
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3426
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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