Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30541
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24290.2 68417.m03488 expressed protein                             27   6.8  
At4g24290.1 68417.m03487 expressed protein                             27   6.8  
At1g18990.1 68414.m02362 expressed protein contains Pfam profile...    27   6.8  
At5g55590.1 68418.m06931 pectinesterase family protein contains ...    27   9.0  
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ...    27   9.0  

>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 149 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 66
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At4g24290.1 68417.m03487 expressed protein
          Length = 350

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 149 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 66
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 524

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 168 GIVRSETGELKEALDDDNKP 227
           G++R E GE +E LD++ KP
Sbjct: 401 GLLREERGEAEEFLDEETKP 420


>At5g55590.1 68418.m06931 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 380

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 558 ISNELYCLCA*HIENTTIVKKNVQKNMAVSIKLITSNKRMWWMLR 424
           I ++ +C  A   ENT + +   Q   AV++++I  +K +++ +R
Sbjct: 172 IESDFFCATAITFENTVVAEAGEQGRQAVALRII-GDKAVFYRVR 215


>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein  ;
           contains Pfam profiles PF00331: Glycosyl hydrolase
           family 10, PF02018: Carbohydrate binding domain
          Length = 752

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 327 RVNLFLRSPPPRAK-LLNSL 383
           RV L+L  PPPRA  LLNSL
Sbjct: 154 RVILYLEGPPPRADILLNSL 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,299,215
Number of Sequences: 28952
Number of extensions: 215186
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)