Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30539
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 31 0.17
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 30 0.40
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 29 0.70
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 29 0.92
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 2.1
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 4.9
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 26 6.5
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 25 8.6
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 8.6
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 8.6
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 31.1 bits (67), Expect = 0.17
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3
Query: 613 PKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRKNLKRGKRKS 446
P R + + + + L E + KK+ +PAK+K + + K ++N +R KRKS
Sbjct: 484 PYRDQVREQARRRRLEVEKTEPKKLA-RPAKIKNEAWSKQKEVKEKRNTRREKRKS 538
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 29.9 bits (64), Expect = 0.40
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -3
Query: 643 KRDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRKNLK 464
K D +KD K K + AL E +L V +KP K V+ L ++ + ++ LK
Sbjct: 124 KPDYEKYDKDKKEEKSKS--RSVALYDEAERLDWVSNKPDKEHVERLVESIKKQDQRRLK 181
Query: 463 RGKRK 449
KR+
Sbjct: 182 NTKRR 186
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 29.1 bits (62), Expect = 0.70
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -3
Query: 646 PKRDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKV 512
PK +++ ++ ++ +I +K + P V +L++V D P+ KV
Sbjct: 173 PKLGRANASSQKEKVRREIAILKKCVHPNVVRLREVIDDPSSTKV 217
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 28.7 bits (61), Expect = 0.92
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -3
Query: 649 NPKRDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRKN 470
N + TS S+ K+GK KE +PE + +K + K K + + K RK
Sbjct: 458 NEEERTSDSKSSAKQGKGNGRAKE---TPEEKRARKKKTKEDKAEKRKSKIPKYEKKRKL 514
Query: 469 LKRGKRK 449
+ G++K
Sbjct: 515 KQSGRKK 521
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = -3
Query: 640 RDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRKNLKR 461
+D S + K K+GK T A S E + ED+ ++D ++ + K K K
Sbjct: 520 KDASRNNKKNKKGKHTQIEDPTAASKEELENLVREDENDSEQLDHFDMKSILKAEKFKKN 579
Query: 460 GKRK 449
K K
Sbjct: 580 RKLK 583
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 643 KRDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKV 518
KR + SS+K+ K+ KK +K+K S + K ++PA +
Sbjct: 214 KRKSGSSDKEEKKKKKI-KLKDKPESTSSVEKVKEGNRPASI 254
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 649 NPKRDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDK-PAKVKVDMLNLNLV 488
+P + +K+P KK + E + +A+ KKVE+K P V D +++ V
Sbjct: 501 SPVTFSEDVKKEPSEEKKLEVSDEAPKAAPLAESKKVEEKEPFYVSKDKKDISAV 555
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 550 LKKVEDKPAKVKVDMLNLNLVTKTRKNLKRGKRKSPLL 437
L ++ D+ K ++ + L+ + KNL R R +PL+
Sbjct: 274 LNRIFDRNPKTRITLPELSTLVSNCKNLTRRLRPAPLV 311
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 738 VEKQAQVQKKSILRIPKMIVRILMQNLRRKTLNVILLVQKKTQNAVK 598
+E Q++ KS+ PK +RIL + NV ++ K T VK
Sbjct: 34 LEISDQIRSKSV--DPKFAMRILKSRIDHSNPNVQIMALKLTDTCVK 78
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 531 LSSTFFNLATSGDKAFSLIESVFLPRFGSFSELEVSRLG 647
L TF A S A + S+F F FSE+ +LG
Sbjct: 420 LVDTFTKFAASAIAANTFTRSIFAGTFPLFSEIMFKKLG 458
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,857
Number of Sequences: 5004
Number of extensions: 28568
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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