Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30539
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1248 + 28685911-28687719                                         31   1.3  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    29   3.9  
03_02_0161 + 6046949-6047063,6048759-6048844,6049029-6049094,604...    29   3.9  
02_05_1168 + 34651143-34651424,34651983-34652138,34652239-346523...    29   3.9  
12_02_1147 - 26459481-26460124,26460241-26460382,26461658-264616...    29   5.1  

>06_03_1248 + 28685911-28687719
          Length = 602

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 628 SSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDM 506
           +S  DP      ++I E+  S E  K KKV  K +KVK  M
Sbjct: 506 ASSSDPATPLNEEAINEEGTSTETGKTKKVAFKGSKVKTAM 546


>09_03_0058 + 11950668-11950701,11951068-11951106,11951586-11951982,
            11952016-11952314,11953743-11956795
          Length = 1273

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -1

Query: 717  QKKSILRIPKMIVRILMQNLRRKTLNVILLVQKKTQNAVKKLTLLRKKPYH 565
            Q  ++  +PK I++++  NL+R  L   L+ Q      V KLTLL+  PY+
Sbjct: 909  QNCTLHAVPKDIIKLV--NLQRLRLKDDLISQLGRVPEVGKLTLLQNMPYY 957


>03_02_0161 +
           6046949-6047063,6048759-6048844,6049029-6049094,
           6049408-6049860,6049960-6050115,6050319-6050465,
           6050570-6050641,6050730-6051293
          Length = 552

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = -3

Query: 640 RDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRKNLKR 461
           R+   +  + K  K T+++K+KA++    +LKK ++K + ++  +   NL  K   N ++
Sbjct: 42  RELGHAYSEIKGLKVTEALKDKAIAELTKELKKQDEKLSSLEKQLEQKNLDVKRLSNERK 101


>02_05_1168 +
           34651143-34651424,34651983-34652138,34652239-34652346,
           34652778-34652888,34652985-34654421,34654598-34654852
          Length = 782

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -3

Query: 649 NPKRDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTR 476
           N +++    EK+    +     KE+ L+   AKLK +E + A  K + +N  ++ KT+
Sbjct: 293 NLQKENKLREKERNEAQSVLRKKEEELAQLRAKLKLIEGQGAAAKEEEINSKVMEKTQ 350


>12_02_1147 -
           26459481-26460124,26460241-26460382,26461658-26461699,
           26463377-26463502
          Length = 317

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 646 PKRDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVD 509
           PKR  +SS +  K+ KK  +  E+A   E  K    ED P +  V+
Sbjct: 129 PKRSRNSSGRKGKQEKKEATENEEAKDAEADKEAPSEDAPKETDVE 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,115,298
Number of Sequences: 37544
Number of extensions: 132658
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)