Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30539
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_19683| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.98 
SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)            30   1.7  
SB_864| Best HMM Match : Sulfotransfer_1 (HMM E-Value=6.4e-05)         30   2.3  
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_27052| Best HMM Match : Clathrin (HMM E-Value=3.3)                  28   6.9  
SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)               28   9.1  

>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/19 (73%), Positives = 18/19 (94%)
 Frame = -1

Query: 219  NNEDLEKKLRERALKSMKK 163
            +NE+LEKKLRE+AL SM+K
Sbjct: 1239 DNENLEKKLREKALLSMRK 1257


>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1706

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = -3

Query: 619 KDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRKNLKRGKRKSP 443
           K P+R     +I   A  P  ++L+++ D PA + ++M N    ++T   +  G+++ P
Sbjct: 349 KKPRRSPSKPAIPAPAYKPRSSRLRQLRDSPAPIDLEMDN---SSETADTVTSGEKEEP 404


>SB_19683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -3

Query: 601 KKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRKNLKRGKRKSPLLKV 431
           K T     KA      K +KVE+ PAK  V  + L +  +  + LK  KRK   LKV
Sbjct: 48  KTTFGRPSKATLVGKGKKRKVEEDPAKEVVISIGLKVWDENEEELKEKKRKRLPLKV 104


>SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)
          Length = 738

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -1

Query: 720 VQKKSILRIPKMIVRILMQNLRRKTLNVILLVQKKTQNAVKKLTLLRKK 574
           + +  +LR  ++++  L Q +RR+T       QK+ +  +K+L LLRK+
Sbjct: 179 ILRNKMLRRRRLVLLRLRQAMRRRTKAQRNAAQKRYRQTLKRLRLLRKR 227


>SB_864| Best HMM Match : Sulfotransfer_1 (HMM E-Value=6.4e-05)
          Length = 524

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -3

Query: 625 SEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRK 473
           +E  PK  K T+S  E  + PE  K  K + K  K    M+   L T   K
Sbjct: 380 TENQPKTKKDTESQPEMKVDPEKKKQSKTDLKAKKYDAFMITQRLATLASK 430


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = -3

Query: 634 TSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRKNLKRGK 455
           T    K+ K  K TD   EK    E  K++ VE+K A+ +V +       K  K  K+GK
Sbjct: 20  TEEDNKESKEEKSTDV--EKKEEEEDGKVEVVEEKAAE-EVKVTKSKGKKKKSKKPKKGK 76

Query: 454 RKSPLLKV 431
           +K  ++KV
Sbjct: 77  KKK-IVKV 83


>SB_27052| Best HMM Match : Clathrin (HMM E-Value=3.3)
          Length = 203

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = -3

Query: 559 VAKLKKVEDKPAKVKVDMLNLNLVTKTRKNLK 464
           +A+L+ + D+  +VKV  + +N+  +++KNLK
Sbjct: 123 LARLRFILDRTLRVKVTRVFINVTDRSKKNLK 154


>SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)
          Length = 689

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
 Frame = -3

Query: 643 KRDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKV---EDKPAKVK---VDMLNLNLVTK 482
           +  TSS+E+     +++ S ++ ++ P+ + L+++   ED+   V     DMLN ++V+K
Sbjct: 231 EEQTSSTEQIRAEVERSSSFRKGSIIPKRSILRRISSREDRERDVDSIDTDMLNPDVVSK 290

Query: 481 TRKNLKRG 458
            +   K+G
Sbjct: 291 VKTMQKKG 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,441,777
Number of Sequences: 59808
Number of extensions: 171758
Number of successful extensions: 676
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)