Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30539
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   3.0  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   3.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.3  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 207 LEKKLRERALKSMKKQTSVSGSD*CS 130
           L  +L+ERA   M K    SGSD C+
Sbjct: 99  LPDQLQERAQSVMGKCLPTSGSDNCN 124


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 207 LEKKLRERALKSMKKQTSVSGSD*CS 130
           L  +L+ERA   M K    SGSD C+
Sbjct: 99  LPDQLQERAQSVMGKCLPTSGSDNCN 124


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 269 PLFSLMISYASCVSYAF*NASYVSYFSW 352
           P+F   I YA+CV   + N  Y+   +W
Sbjct: 95  PIFK-GIGYATCVLSCWTNIYYIIILAW 121


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 269 PLFSLMISYASCVSYAF*NASYVSYFSW 352
           P+F   I YA+CV   + N  Y+   +W
Sbjct: 148 PIFK-GIGYATCVLSCWTNIYYIIILAW 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,715
Number of Sequences: 438
Number of extensions: 1781
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)