Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30539
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28770.1 68416.m03591 expressed protein                             33   0.26 
At5g53440.1 68418.m06641 expressed protein                             30   1.4  
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel...    30   1.9  
At2g42550.1 68415.m05266 protein kinase family protein contains ...    30   1.9  
At5g12050.1 68418.m01409 expressed protein                             29   3.2  
At4g11420.1 68417.m01840 eukaryotic translation initiation facto...    28   7.5  
At5g61280.1 68418.m07690 remorin family protein contains Pfam do...    27   9.9  
At2g41930.1 68415.m05187 protein kinase family protein contains ...    27   9.9  

>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = -3

Query: 643  KRDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRKNLK 464
            K++     +D K  KK +  KEK    E    KK EDK    K++  N N   K  KN K
Sbjct: 1080 KKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSN-KKKEDKNEK 1138

Query: 463  RGKRKSPLLK 434
            +  +   L+K
Sbjct: 1139 KKSQHVKLVK 1148


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 646 PKRDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNL 491
           P+R  SSS    + G  +D I + A S EVA+L    ++  + KV     N+
Sbjct: 454 PERQLSSSVVQEENGNASDQITKGASSREVAELSGGSERGTRQKVSEKTANM 505


>At5g60530.1 68418.m07590 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 439

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -3

Query: 649 NPKRDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRKN 470
           N  +D    +KD ++  K    KEK    E  K KK +++  K K D L      K RK 
Sbjct: 56  NGPKDKEQEKKDKEKAAKDKKEKEKKDKEE--KEKKDKERKEKEKKDKLEKEKKDKERKE 113

Query: 469 LKRGKRK 449
            +R +++
Sbjct: 114 KERKEKE 120


>At2g42550.1 68415.m05266 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 344

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = -3

Query: 649 NPKRDTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRKN 470
           NPK   S+S+    +  + + +   +L P   K+K   +KP  V    L L ++      
Sbjct: 258 NPKERGSASDLLSHQFLRGEVVSGFSLPPLKLKIKLAPEKPTNVSKKPLKLKIIPPKPPQ 317

Query: 469 LKRGKRKSPLLKV 431
            K+G  K   LK+
Sbjct: 318 FKKGGIKPLKLKI 330


>At5g12050.1 68418.m01409 expressed protein
          Length = 362

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 631 SSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDK 530
           SSS+ +   GKKT S +     P   K +K EDK
Sbjct: 76  SSSDTELTHGKKTTSSRPLCFGPSKTKPRKTEDK 109


>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
           subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
           eukaryotic translation initiation factor 3 subunit 10
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
           SWISS-PROT:Q9LD55
          Length = 987

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -3

Query: 637 DTSSSEKDPKRGKKTDSIKEKALSPEVAKLKKVEDKPAKVKVDMLNLN-LVTKTRKNLKR 461
           +    +K  K  K T+  ++K L+ E+A+ +K        + ++     L+ +T K +K+
Sbjct: 586 EREEEQKRLKLQKLTEEAEQKRLAAELAERRKQRILREIEEKELEEAQALLEETEKRMKK 645

Query: 460 GKRKSPLL 437
           GK+K PLL
Sbjct: 646 GKKK-PLL 652


>At5g61280.1 68418.m07690 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 263

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 589 SIKEKALSPEVAKLKKVEDKPAKVKVDMLNLNLVTKTRKNLKRGKRKSPLLK 434
           S   KA S E +++KK+  +  K+K D++      K    L   KRKS L K
Sbjct: 151 SASSKADSWEKSQIKKIRLRYEKMKADIVGWENERKLAATLLMEKRKSELEK 202


>At2g41930.1 68415.m05187 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 347

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 583 KEKALSPEVAKLKKVEDKPAKVKV 512
           K K +S +  +LKKV +KP KVK+
Sbjct: 310 KLKVISQKPQQLKKVSNKPLKVKI 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,202,382
Number of Sequences: 28952
Number of extensions: 134040
Number of successful extensions: 510
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)