Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30538
(392 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 71 5e-14
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 71 9e-14
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 49 2e-07
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 0.26
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 27 1.4
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 1.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 2.4
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 26 2.4
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 25 4.2
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 7.3
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 24 7.3
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 24 9.7
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 24 9.7
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 24 9.7
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 24 9.7
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 24 9.7
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 24 9.7
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 71.3 bits (167), Expect = 5e-14
Identities = 32/58 (55%), Positives = 40/58 (68%)
Frame = +2
Query: 2 DEKLKEKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 175
D LK+K+ SDK+ I TI+WLD N A K+EYE KQKELEG+ NPI+ K+YQ
Sbjct: 553 DPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 70.5 bits (165), Expect = 9e-14
Identities = 31/58 (53%), Positives = 41/58 (70%)
Frame = +2
Query: 2 DEKLKEKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 175
D LK+K+ SDK+T+ TI+WLDSN A K+E+E KQKELE + NPI+ K+YQ
Sbjct: 553 DPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 49.2 bits (112), Expect = 2e-07
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 2 DEKLKEKISDSDKQTILDKCNNTIKWLD-SNQLADKEEYEHKQKELEGIYNPIITKMY 172
DE+L K+ DKQ +LD + +WL+ + A KEE+E ++++L+ + +PI K+Y
Sbjct: 584 DEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.1 bits (62), Expect = 0.26
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 14 KEKISDSDKQTILD-KCNNTIKWLDSNQLADKEEYEHKQKELE 139
+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 1.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 62 NNTIKWLDSNQLADKEEYEHKQKELEGIYNP 154
NN +K D + ++ ++E E + +GIY P
Sbjct: 141 NNVVKEDDKSSISSEDEEEELRSAKDGIYRP 171
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 183 EESPEVCRASRAEHPEPE 236
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 2.4
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +2
Query: 17 EKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIY 148
E+ SDSD++ D N++ + + ++ + ++ E +G+Y
Sbjct: 1823 EESSDSDREEPPDLYRNSVLGIFQGDIVNENDENYEDSEDDGVY 1866
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 2.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +2
Query: 2 DEKLKEKISDSDKQTILDKCNNTIKWL 82
+++++ K+S D L+ CNN + L
Sbjct: 262 EQEIRRKVSSDDVHNYLESCNNHLSML 288
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 4.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 29 DSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKM 169
D K + L C N+ K DSNQ+ + E K+K+ + II +M
Sbjct: 204 DIVKLSELRNCINSSK--DSNQIQELENLLRKEKQRNTEHEKIIRRM 248
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 174 RVPEESPEVCRASRAEHPEPEVPPPGLRRW 263
R+P+ES E P VP LRR+
Sbjct: 126 RMPDESASYRTRGEYESSSPRVPQKSLRRY 155
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 7.3
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 2 DEKLKEKISDSDK--QTILDKCNNTIKWLDSNQLADKE 109
D+K+++K + K Q+ L+ N W D+N+L + E
Sbjct: 10 DKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNELE 47
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 32 SDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGI 145
S KQ I+D + I L+ ++ E+E K +EG+
Sbjct: 81 SPKQVIVDAAKSLITHLEEIKVNFMREWELKMISVEGV 118
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 23.8 bits (49), Expect = 9.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 13 QGKDL*L*QADHPRQVQQHHQVAGF 87
+GK++ L A+ Q+Q+H+QV F
Sbjct: 1099 KGKEMILSVAEKVNQIQEHYQVLYF 1123
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 9.7
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 134 LEGIYNPIITKMY 172
L+G+Y+ IITK+Y
Sbjct: 282 LDGVYDTIITKLY 294
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 174 RVPEESPEVCRASRAEHPEPEVP 242
++ ++ P RASRA EP+ P
Sbjct: 235 KLGDKGPAAARASRAAAEEPQAP 257
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/52 (23%), Positives = 22/52 (42%)
Frame = +2
Query: 2 DEKLKEKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYNPI 157
+ +K + + D L+ N + L N YEH QK + ++N +
Sbjct: 619 NSNVKTQSVEPDNGLSLEALKNENQTLLKNLEDSTARYEHLQKSFKNVFNQL 670
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 23.8 bits (49), Expect = 9.7
Identities = 4/21 (19%), Positives = 14/21 (66%)
Frame = -3
Query: 354 FNQGEVTRWLLQVGLSVVWNV 292
++ G +W + +G++++W +
Sbjct: 140 YSHGTTAQWRISIGINLLWGI 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,345,016
Number of Sequences: 5004
Number of extensions: 23064
Number of successful extensions: 105
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -