Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30538
(392 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 89 2e-18
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 4e-15
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 60 8e-10
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 46 1e-05
SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.25
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.77
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9) 29 1.3
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 29 1.3
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_8472| Best HMM Match : TatC (HMM E-Value=1.4) 27 4.1
SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 27 5.4
SB_58627| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 7.2
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1) 27 7.2
SB_14297| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0) 26 9.5
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042) 26 9.5
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 26 9.5
SB_37539| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_3971| Best HMM Match : UPF0058 (HMM E-Value=5.6) 26 9.5
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 88.6 bits (210), Expect = 2e-18
Identities = 36/58 (62%), Positives = 49/58 (84%)
Frame = +2
Query: 2 DEKLKEKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 175
D+K+K+KIS+ DK+ ILDKC +KWLD+NQ A+K+E+E+ QKELE + NPIITK+YQ
Sbjct: 557 DDKVKDKISEEDKKAILDKCTEVLKWLDTNQTAEKDEFEYHQKELEKVCNPIITKLYQ 614
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 77.4 bits (182), Expect = 4e-15
Identities = 30/58 (51%), Positives = 46/58 (79%)
Frame = +2
Query: 2 DEKLKEKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 175
DEK+K+K+S+ +++ ++ +C T+ WL+ NQ A+KEE + QKELEG+ NPIITK+YQ
Sbjct: 649 DEKVKDKLSEDEREKVISRCKATLDWLEHNQSAEKEEIDAHQKELEGVCNPIITKLYQ 706
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 59.7 bits (138), Expect = 8e-10
Identities = 23/57 (40%), Positives = 40/57 (70%)
Frame = +2
Query: 2 DEKLKEKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMY 172
+ L+ K+S SDK T+ +K + WL+ N LA+KEE+E ++KEL+ + +PI+ K++
Sbjct: 556 EPSLEGKLSQSDKDTVKNKVEEVLNWLEKNSLAEKEEFEEQEKELQRVCSPIMAKVH 612
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 45.6 bits (103), Expect = 1e-05
Identities = 18/50 (36%), Positives = 33/50 (66%)
Frame = +2
Query: 5 EKLKEKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYNP 154
EKL K+S+ DK+TI + I W+D NQ A E+++ ++++ + +Y+P
Sbjct: 1252 EKLGGKLSEDDKKTITEAVEKAISWMDKNQDASVEDFKKEKRKWKMLYSP 1301
>SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 699
Score = 31.5 bits (68), Expect = 0.25
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 14 KEKISDSDKQTILDKCNNTIKW-LDSNQLADKEEYEHKQKELEGIYNPIITKM 169
K K DK+ L + T+K+ LD +LA KE++ +KE EG + TKM
Sbjct: 108 KHKRDLRDKEQELSELRKTVKYALDQEKLA-KEQFGDLKKEFEGYKKKMDTKM 159
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 30.7 bits (66), Expect = 0.44
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 5 EKLKEKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELE 139
E +KE + +++++ KC NT K LD+++ D+E+ E Q+E E
Sbjct: 1079 ETMKESLLNANREIGRLKCENTAKNLDADRKEDQED-EEVQREGE 1122
>SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 29.9 bits (64), Expect = 0.77
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Frame = +2
Query: 5 EKLKEKISDSDKQTILDKCNNTIKWLDSN------QLADK-EEYEHKQKELEGI 145
+K ++ D +K+ +++C TIK LDSN Q+AD+ EE + ++ELE +
Sbjct: 182 QKTRKAQDDCEKE--VNRCEATIKTLDSNLKDLRQQVADRDEELNNNRQELESV 233
>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
Length = 496
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 278 SSMVGPAPQPRGRHLRLRVLRPGSPAYLRGLLRHPGTSS*LSDCKCL-PILSACAHTPP 105
S+ +GP P P R + P SP + LLR G++S + + L LS+ TPP
Sbjct: 66 SNALGPPPDPPSRPGGGKEEEPTSPPPMSNLLRELGSTSLMQRAQSLDESLSSKQGTPP 124
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 213 RAEHPEPEVPPPGLRRWPHHR 275
+A H +P VPPP + PHHR
Sbjct: 263 KAHHSDPAVPPP-IEHRPHHR 282
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/68 (30%), Positives = 25/68 (36%)
Frame = -1
Query: 239 HLRLRVLRPGSPAYLRGLLRHPGTSS*LSDCKCLPILSACAHTPPCRPAGWNPAT*WCCC 60
HL +RVL P P L LS C CLP+ +C H + P C
Sbjct: 1140 HLSVRVLSPVCPRVFTCLYACVN----LSVCVCLPVCFSCVHLSVRVLSPVCPRVFTCLY 1195
Query: 59 TCRGWSAC 36
C S C
Sbjct: 1196 ACVNLSVC 1203
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 239 HLRLRVLRPGSPAYLRGLLRHPGTSS*LSDCKCLPILSACAH 114
HL +RVL P P L LS C CLP+ +C H
Sbjct: 1177 HLSVRVLSPVCPRVFTCLYACVN----LSVCVCLPVCFSCVH 1214
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 14 KEKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQ 127
+EK ++T D+ N TI +L+ EE++HK+
Sbjct: 1693 REKWRKEYEKTTQDEINKTISYLEDQYTRGLEEFKHKE 1730
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 5 EKLKEKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKE 133
EKLKE I D K +LD+ ++W+ + ++ + ++KE
Sbjct: 867 EKLKEDIHDPHK--VLDRVKYRVEWVKHQEKEKQKLEDEREKE 907
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 26 SDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYN 151
S+ ++ LDK NTI+ L + +L D+ E E+ + ELE + N
Sbjct: 1900 SEIYRKDALDK-GNTIEKLRAEKLQDEIEIENLKAELESLRN 1940
>SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)
Length = 476
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 129 KNWKAFTIR*LRRCTRVPEESPEVCRASRAEHPEPEVP 242
KN+ ++ L R P+E ++ SR PEP P
Sbjct: 8 KNFDEVVVQLLMRMYEPPDEGSDIATFSRESDPEPNPP 45
>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
Length = 1279
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 2 DEKLKEKISDSDK-QTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYNPII 160
+E L++++S+ ++ Q ++++ N T+K L +K+E K L+ +N ++
Sbjct: 32 NESLQKRVSELEEHQKVIEETNETLKKQHETVLFEKDELTLTIKTLQEEFNTML 85
>SB_58627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 114 MSTSRKNWKAFTIR*LRRCTRVPEESPEVCRASR 215
+ T+++N + IR LR+C P E RASR
Sbjct: 6 VETTQRNTRRQNIRSLRKCRNAPVEQKGCRRASR 39
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 176 PGTSS*LSDCKCLPILSACAHTPPCRPAG 90
PGT + KC+ +L C P C PAG
Sbjct: 2968 PGTYQCADNRKCISVLEVCDGIPSC-PAG 2995
>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
Length = 630
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -3
Query: 372 GSIFIYFNQGEVTRWLLQVGLSVVWN 295
G+ +Y G+ +WL +VG+ W+
Sbjct: 604 GNRIVYVTSGKYLKWLPEVGIDASWD 629
>SB_14297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 5 EKLKEKISDSDKQTILDKCNNTIKWLDSNQ 94
EK + QT+LDKC +WL +N+
Sbjct: 152 EKSDPSLLTEVNQTLLDKCQYIEEWLTANE 181
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/53 (26%), Positives = 20/53 (37%)
Frame = +3
Query: 87 PTSWPTRRSMSTSRKNWKAFTIR*LRRCTRVPEESPEVCRASRAEHPEPEVPP 245
P S+P S S S+K W+ L+R ++ E P PP
Sbjct: 45 PVSFPAASSQSISQKPWQQSPTSTLQRTSQTNNELSNALNTHPKRWPPVNTPP 97
>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
Length = 1115
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +2
Query: 71 IKWLDSNQLADKEEYEHKQKELEGIYNPIITK 166
++W D D EY+ + ++E N ++TK
Sbjct: 805 MQWKDKMSQKDSMEYKQTRSKIESAINNVVTK 836
>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
Length = 1558
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 2 DEKLKEKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYNP 154
DE+ E++ ++ Q D ++ D Q A++ +Y ++ +EL+G NP
Sbjct: 235 DERAHEELHNTAHQKFTDAIT---RFFDKLQ-AEETKYNNRMEELQGALNP 281
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 20 KISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKEL 136
KIS S+ + IL +CNN + ++ YE +E+
Sbjct: 1462 KISASNVEEILKECNNDLSRKQMIEICQLRSYELSDEEI 1500
>SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1415
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 47 ILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYN 151
ILD + +W D N ++ + +LEGIYN
Sbjct: 770 ILDNNSTKCRWWDFNANGGMGDWSAEGCQLEGIYN 804
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 74 KWLDSNQLADKEEYEHKQKELEGIYNPIITKM 169
KW SN A E+E+K KE++ Y I ++
Sbjct: 760 KWSKSNVDAPYSEFENKMKEIKDHYEREIERL 791
>SB_37539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/53 (37%), Positives = 23/53 (43%)
Frame = +2
Query: 8 KLKEKISDSDKQTILDKCNNTIKWLDSNQLADKEEYEHKQKELEGIYNPIITK 166
KLK K D D + LDK K SN E K L+GI P I+K
Sbjct: 126 KLKVKYFDGDGEVQLDKVWTLDKLPISNLSIPSSEDIRKCSHLQGIDFPEISK 178
>SB_3971| Best HMM Match : UPF0058 (HMM E-Value=5.6)
Length = 132
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 8 KLKEKISDSDKQTIL-----DKCNNTIKWLDSNQLADKEEYEHKQKELEGIYNPII 160
+ +E + D K +I+ D+ + KW+ N E Y+H + ++ YNP I
Sbjct: 68 RFEENVFDFLKASIIKSFKDDERRSQSKWIKENVPETSEVYDHILETVQNRYNPEI 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,951,913
Number of Sequences: 59808
Number of extensions: 221605
Number of successful extensions: 851
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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