Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30538
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   1.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   3.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.7  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +3

Query: 165 RCTRVPEESPEVCRASRAEHPEPEVPPPGLRRWPHHRGG 281
           R  R PE  P   R      P+P  P P LRR P    G
Sbjct: 115 RLRREPEAEPGNNRPVYI--PQPRPPHPRLRREPEAEPG 151



 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 225 PEPEVPPPGLRRWPHHRGG 281
           P+P  P P LRR P    G
Sbjct: 107 PQPRPPHPRLRREPEAEPG 125


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 43  DHPRQVQQHHQVAGFQPAGRQGGV*AQAERIG 138
           +HP Q QQH+  A   P   Q  V  Q+++ G
Sbjct: 19  EHPHQHQQHYGAAVQVPQQTQ-SVQQQSQQAG 49


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 5   EKLKEKISDSDKQTILDKCN 64
           EK+K  +S    +T+  KCN
Sbjct: 337 EKIKISVSYPSTETLNTKCN 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,452
Number of Sequences: 438
Number of extensions: 2008
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)