Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30536X
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    28   0.93 
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   5.0  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    25   5.0  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   6.6  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   6.6  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   8.7  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   8.7  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +1

Query: 289 IADMYKNFAGVNLKDVFKQLQKDVDDFGLEDVDVKLPRF--QISTNVVLNKPLND 447
           +  +Y+N   +  K  F     + D FGLE  +  LP     + ++  L  P ND
Sbjct: 294 LGPVYENSGHLPSKSHFSSTDSNTDSFGLESDERSLPSVSNDLKSSETLKNPRND 348


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 427 LNKPLNDMGVYDIFQPDLANFQR 495
           L++   D+ V+  FQP LANF++
Sbjct: 253 LDETETDVEVFSCFQPQLANFKK 275


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 234 TAPTESTDAGHTPAPENEDR 293
           T PTE ++A   P+P+ E+R
Sbjct: 488 TQPTEQSNAQQAPSPKEEER 507


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 277 PRTKIADMYKNFAGVNLKDVFKQLQKDVDDFGL 375
           PR ++    +N +GV L      L + +DDF L
Sbjct: 91  PRLRVRSKQENISGVFLPTFEMNLDESIDDFQL 123


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 5   SNVLRSDDFQ-ESRLILTNVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVN 160
           ++ L S+D   E  L +T  + +   +GL +  SD  +   +N+D  ++ S +
Sbjct: 478 THALTSEDADSEPVLFITKWVDYSNKYGLGYQLSDESVGVHFNDDTSLLFSAD 530


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 304 KNFAGVNLKDVFKQLQKDVDDFGLEDVDVKLPRF 405
           ++F   ++KD+F +LQKD+    +E     LP F
Sbjct: 274 QDFIDNDVKDMFPELQKDIHVTLIEAAPGVLPMF 307


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 143 PVGLHYRRAPVRCQIC*TAIPKGL*RISRWLVSILILG 30
           P  LH  +A V+C+ C + +PK    +S W + +L+ G
Sbjct: 622 PTILHMLKAFVQCEQCESPLPK----LSPWNMLLLLHG 655


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 397 PRFQISTNVVLNKPLNDMG 453
           P  QI  ++VLNKP++ +G
Sbjct: 534 PLLQIEKSLVLNKPIHQIG 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,807
Number of Sequences: 5004
Number of extensions: 36450
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)