Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30536X
(509 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0771 + 6453130-6454488 47 8e-06
01_01_1152 + 9170628-9171899 40 0.002
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 35 0.044
11_01_0767 + 6438648-6438809,6439146-6440000 33 0.13
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 33 0.18
04_04_0619 + 26652923-26653267,26653440-26654273 32 0.23
12_02_0906 + 24194108-24194253,24194852-24194984 30 0.94
02_05_0660 + 30687366-30687370,30687823-30688765,30688820-306889... 27 8.8
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 27 8.8
>11_01_0771 + 6453130-6454488
Length = 452
Score = 47.2 bits (107), Expect = 8e-06
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +2
Query: 35 ESRLILTNVISFKGLWGLPFNKSDTELEPFYNED 136
E+ ++L N I FKG W PFN+SDTE +PFY D
Sbjct: 201 ETAVVLGNAIYFKGKWDRPFNESDTERKPFYRHD 234
>01_01_1152 + 9170628-9171899
Length = 423
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 44 LILTNVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYQKGQFPFS-NLKKLKAF- 217
++L N + FKG W LPF+ S T PF+ D G+V + + PF ++ F
Sbjct: 190 VVLANAVHFKGTWSLPFHPSATFHAPFHLLDG---GAVRAPFMTTEIPFERHVAAFPGFT 246
Query: 218 VLELPYGTDG 247
L+LPY G
Sbjct: 247 ALKLPYKNVG 256
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 34.7 bits (76), Expect = 0.044
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 38 SRLILTNVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYQKGQF--PFSNLKKLK 211
+RL+L N + FKG W F+ S T+ F+ D + + M K Q+ + NLK
Sbjct: 242 TRLVLGNALYFKGAWTEKFDASKTKDGEFHLLDGKSVQAPFMSTSKKQYILSYDNLK--- 298
Query: 212 AFVLELPYGTDG 247
VL+LPY G
Sbjct: 299 --VLKLPYQQGG 308
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 33.1 bits (72), Expect = 0.13
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 35 ESRLILTNVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMY-QKGQFPFSNLKKLK 211
++R ++ N I FKG W PF+KSDT F RL SV + + Q+ + ++
Sbjct: 86 DTRHVVGNAIYFKGEWLAPFDKSDTAEREF---RRLDGSSVEVPFMQRPSGSYHHVACHD 142
Query: 212 AF-VLELPY 235
F VL LPY
Sbjct: 143 GFRVLRLPY 151
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 32.7 bits (71), Expect = 0.18
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +2
Query: 38 SRLILTNVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYQKGQFPFSNLKKLKAF 217
+RL+L N + FKG W F+ S T+ F D + + M K Q+ S+ LK
Sbjct: 34 TRLVLGNALYFKGAWTEKFDASKTKDGEFRLLDGKSVLAPFMSTSKKQY-LSSYDSLK-- 90
Query: 218 VLELPY 235
VL+LPY
Sbjct: 91 VLKLPY 96
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 32.3 bits (70), Expect = 0.23
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 2 VSNVLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTELEPFYNED 136
++N + F S + +L N + FK WG F DT+ F+ +D
Sbjct: 135 LNNTISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFHRQD 180
>12_02_0906 + 24194108-24194253,24194852-24194984
Length = 92
Score = 30.3 bits (65), Expect = 0.94
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 278 GCGSMTSISTFRRCRKEVPV 219
GCGS IS+ RRCR+E V
Sbjct: 12 GCGSQRQISSLRRCRREEEV 31
>02_05_0660 +
30687366-30687370,30687823-30688765,30688820-30688971,
30689301-30689316,30690410-30690508,30690598-30690671,
30690827-30691076
Length = 512
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 50 LTNVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYQKGQFPFSNLKK 205
LT V+ G + E P+ N L++ S + Q G+ F+NLKK
Sbjct: 91 LTTVVVVSGGAAAAVYFGNLETVPYTNRTHLILLSPPLERQLGESQFNNLKK 142
>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 210 KPSYWNFLTAPTESTDAGHTPAPENEDRRHVQELRRCQ-SQG 332
+P WN L+AP DA P + DR + +L R SQG
Sbjct: 1109 EPFLWNVLSAPLPKNDAIDGGLPGSADRPKLLKLDRSPLSQG 1150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,586,465
Number of Sequences: 37544
Number of extensions: 232525
Number of successful extensions: 665
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -