Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30536X
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      52   4e-07
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      41   7e-04
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      39   0.003
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_42197| Best HMM Match : rve (HMM E-Value=0.017)                     28   3.9  
SB_54861| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_9402| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)                     27   6.8  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 26/66 (39%), Positives = 35/66 (53%)
 Frame = +2

Query: 38  SRLILTNVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYQKGQFPFSNLKKLKAF 217
           +RL L N I FKG+W  PF K  +    F       +  V MM+QK +F + +  K K  
Sbjct: 121 TRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEV-EVEMMFQKSKFKYLHSDKYKCK 179

Query: 218 VLELPY 235
           +LELPY
Sbjct: 180 LLELPY 185



 Score = 35.5 bits (78), Expect = 0.026
 Identities = 18/82 (21%), Positives = 42/82 (51%)
 Frame = +1

Query: 256 MLVILPHPRTKIADMYKNFAGVNLKDVFKQLQKDVDDFGLEDVDVKLPRFQISTNVVLNK 435
           M+++LP     +A   ++     + D+F  +          DV+V +P+F++++   LN+
Sbjct: 192 MVLVLPDETEGLARFEQDLTHDKMTDIFNSVSSQRP----ADVEVYIPKFKMTSEFKLNE 247

Query: 436 PLNDMGVYDIFQPDLANFQRVT 501
            L ++G+  +F    A+F  ++
Sbjct: 248 ALQELGMKKMFDQAAADFTGIS 269


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 2   VSNVLRSDDFQESRLI-LTNVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYQKG 178
           + N++    F +  ++ L N + FKG W   FN++ T+   F       I  V  MYQ  
Sbjct: 145 IKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEI-QVQFMYQSS 203

Query: 179 QFPFSNLKKLKAFVLELPY 235
           +F +     L   ++ELPY
Sbjct: 204 EFRYLESSTLGCQIVELPY 222



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 22/85 (25%), Positives = 46/85 (54%)
 Frame = +1

Query: 247 KVLMLVILPHPRTKIADMYKNFAGVNLKDVFKQLQKDVDDFGLEDVDVKLPRFQISTNVV 426
           K+ M+V+LP+   ++  + K  + +N K+  ++    + +   E+V+V LP+F ++    
Sbjct: 226 KLSMVVLLPN---EVDGLGKLESSLN-KETLQEAMTSLRNSHPEEVEVTLPKFTLTQEFS 281

Query: 427 LNKPLNDMGVYDIFQPDLANFQRVT 501
           L + L  MG  D+F P  A+   ++
Sbjct: 282 LGETLKGMGASDLFSPGKADLSGIS 306


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +2

Query: 38  SRLILTNVISFKGLWGLPFNKSDTELEPFY-NEDRLVIGSVNMMYQKGQFPFSNLKKLKA 214
           +RLI+ N + FKG+W   F + +T    F+  E       V MM +K +  F     +K 
Sbjct: 126 TRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRKMKVNFYYDADIKC 185

Query: 215 FVLELPYGTD 244
            V+ELPY  D
Sbjct: 186 RVVELPYSGD 195



 Score = 34.7 bits (76), Expect = 0.045
 Identities = 22/82 (26%), Positives = 43/82 (52%)
 Frame = +1

Query: 256 MLVILPHPRTKIADMYKNFAGVNLKDVFKQLQKDVDDFGLEDVDVKLPRFQISTNVVLNK 435
           M++ILP   + I  + K+   V + + +++L  +        V+V +P+F++S  + L  
Sbjct: 199 MVIILPEEPSGIFSLEKSI-DVEIMEKWRRLMINTT------VEVSIPKFRLSQKLELRS 251

Query: 436 PLNDMGVYDIFQPDLANFQRVT 501
            L D+GV DIF    A+   ++
Sbjct: 252 LLQDLGVSDIFDSRKADLSGIS 273


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +1

Query: 325 LKDVFKQLQKDVDDFGLEDVDVKLPRFQISTNVVLNKPL---NDMGVYDIFQPDLANFQ 492
           +KD +  +++   D G+ +   K       TN+   +PL   N+MG  + F P L NFQ
Sbjct: 113 IKDAYDDIRRHQSDRGVNNRKSKALIGNSETNLKCRQPLPDTNEMGDDEAFLPSLKNFQ 171


>SB_42197| Best HMM Match : rve (HMM E-Value=0.017)
          Length = 602

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 43  IDTNQRDILQRPLGIAVQQI*HRTGALL**RPTGNRQRKHD 165
           IDTN+RDI QR L  A++ +   TG        G+ +++HD
Sbjct: 240 IDTNKRDIFQRQLDSALEGLNGVTGIADDIFVYGSTEKEHD 280


>SB_54861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 234 TAPTESTDAGHTPAPENEDRRHVQELR 314
           T P ES D+ +   PE+ED   VQ  R
Sbjct: 48  TVPAESNDSQYVSVPESEDSARVQYQR 74


>SB_9402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 26/93 (27%), Positives = 42/93 (45%)
 Frame = +1

Query: 226 TSLRHRRKVLMLVILPHPRTKIADMYKNFAGVNLKDVFKQLQKDVDDFGLEDVDVKLPRF 405
           T  +H+  ++M ++L +  T    + +  AG +L++V   L K        D D    RF
Sbjct: 246 TGCKHKCAMVMRILLENSST----LQEVIAGNHLENVLLHLFKKFPVASFWDEDRFGQRF 301

Query: 406 QISTNVVLNKPLNDMGVYDIFQPDLANFQRVTK 504
               N  L+K + D  + D F PDL  F  + K
Sbjct: 302 LDIVNE-LDKCVRDRHLADFFIPDLNLFTDIDK 333


>SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)
          Length = 474

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 87  NPQRPLKDITLVSINLDSWKSSERRTFE 4
           NP+ PL+D T+  ++L   + S+ RTF+
Sbjct: 172 NPRSPLEDYTIHIVDLRKGRLSDSRTFK 199


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 125  YNEDRLVIGSVNMMYQKGQFPFSNLKKLKAFVLELPYGTD 244
            Y   R     +N+M +KG +P+  +  L+ F  +LP   D
Sbjct: 1947 YTSQRFECERLNLMARKGVYPYDYMDSLERFDEKLPARED 1986


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,653,571
Number of Sequences: 59808
Number of extensions: 275324
Number of successful extensions: 754
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)