Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30536X
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   7.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 344 CLKTSLRLTPAKFLYMSAIFVLGCGSMT-SISTFRRCRKEVPVR 216
           CLK  L  T  +  Y + +F+ G   +T S  TF      VP R
Sbjct: 289 CLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPAR 332


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 344 CLKTSLRLTPAKFLYMSAIFVLGCGSMT-SISTFRRCRKEVPVR 216
           CLK  L  T  +  Y + +F+ G   +T S  TF      VP R
Sbjct: 258 CLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPAR 301


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 344 CLKTSLRLTPAKFLYMSAIFVLGCGSMT-SISTFRRCRKEVPVR 216
           CLK  L  T  +  Y + +F+ G   +T S  TF      VP R
Sbjct: 309 CLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPAR 352


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 344 CLKTSLRLTPAKFLYMSAIFVLGCGSMT-SISTFRRCRKEVPVR 216
           CLK  L  T  +  Y + +F+ G   +T S  TF      VP R
Sbjct: 258 CLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNAVPAR 301


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 506 SFVTRWKLAKSGWNM 462
           S VTR KL + GW++
Sbjct: 130 SLVTRQKLLELGWDV 144


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 506 SFVTRWKLAKSGWNM 462
           S VTR KL + GW++
Sbjct: 252 SLVTRQKLLELGWDV 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,160
Number of Sequences: 438
Number of extensions: 2609
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)