Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30536X
         (509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    34   0.064
At1g64030.1 68414.m07252 serpin family protein / serine protease...    30   0.79 
At5g39380.1 68418.m04771 calmodulin-binding protein-related has ...    30   1.0  
At2g14540.1 68415.m01628 serpin family protein / serine protease...    28   4.2  
At1g51330.1 68414.m05772 serpin-related / serine protease inhibi...    28   4.2  
At2g47390.1 68415.m05915 expressed protein                             27   5.5  
At1g62170.1 68414.m07013 serpin family protein / serine protease...    27   5.5  
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr...    27   9.7  

>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 33.9 bits (74), Expect = 0.064
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 32  QESRLILTNVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYQKGQFPFSNLKKLK 211
           +ES LIL N + FKG W   F+   T+   F+  D  ++    M   K Q+    L+   
Sbjct: 163 RESMLILANAVYFKGAWSKKFDAKLTKSYDFHLLDGTMVKVPFMTNYKKQY----LEYYD 218

Query: 212 AF-VLELPYGTD 244
            F VL LPY  D
Sbjct: 219 GFKVLRLPYVED 230


>At1g64030.1 68414.m07252 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311, serpin [Triticum
           aestivum] GI:871551; contains Pfam profile PF00079:
           Serpin (serine protease inhibitor)
          Length = 385

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 47  ILTNVISFKGLWGLPFNKSDTELEPFYNEDRLVIGSVNMMYQKGQFPFSNLKKLKAF-VL 223
           I  N +SFKG W  PF K  T    FY    LV G+   +     +    ++    F VL
Sbjct: 167 IYANALSFKGAWKRPFEKYYTRDNDFY----LVNGTSVSVPFMSSYENQYVRAYDGFKVL 222

Query: 224 ELPY 235
            LPY
Sbjct: 223 RLPY 226


>At5g39380.1 68418.m04771 calmodulin-binding protein-related has
           weak similarity to calmodulin-binding proteins
          Length = 507

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 343 QLQKDVDDFGLEDVDVKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRVTKE 507
           +  K +DD+ +E+  + +   + + NVV     N  G  + F P L   Q   K+
Sbjct: 289 EFNKQLDDYPVEEKTLHVVEMETTNNVVSENDQNQQGFVEPFLPPLPPTQSTPKD 343


>At2g14540.1 68415.m01628 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 407

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 47  ILTNVISFKGLWGLPFNKSDTELEPFY 127
           I  N + FKG W   F+KS T  +PF+
Sbjct: 195 IYGNALYFKGAWEKAFDKSMTRDKPFH 221


>At1g51330.1 68414.m05772 serpin-related / serine protease
           inhibitor-related similar to serpin [Hordeum vulgare
           subsp. vulgare] CAA64599.1  GI:1197577
          Length = 193

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 47  ILTNVISFKGLWGLPFNKSDTELEPFY--NEDRLVIGSVNMMYQKGQFPFSNLKKLKAFV 220
           I  N + FKG W   F KS T  +PF+  N  ++++  +    +K    ++  K L+   
Sbjct: 67  IYGNALYFKGAWENKFGKSMTIHKPFHLVNGKQVLVPFMKSYERKYMKAYNGFKVLRILQ 126

Query: 221 LELPY 235
             + Y
Sbjct: 127 YRVDY 131


>At2g47390.1 68415.m05915 expressed protein
          Length = 961

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 151 QRKHDVPEGAVPVLKPKEA*SLRTGTSLR--HRRKVLMLVILPHPRTKIADMYKNFAGVN 324
           Q++ D+    + +L  KE+ +  T  SL+    RKV  +   PHP  ++A + K      
Sbjct: 600 QKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASLQKEMIRYQ 659

Query: 325 LKD 333
            KD
Sbjct: 660 RKD 662


>At1g62170.1 68414.m07013 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           GI:9937311 from [Cucurbita maxima]; contains Pfam
           profile PF00079: Serpin (serine protease inhibitor)
          Length = 433

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 56  NVISFKGLWGLPFNKSDTELEPFY 127
           + + FKG W   ++KS T+ +PFY
Sbjct: 234 SALYFKGTWEEKYSKSMTKCKPFY 257


>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 421

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 328 KDVFKQLQKDVDDFGLEDVDVKLPRFQISTNVVLN 432
           +D FK+L + VD   LE +DV   R  ++   VLN
Sbjct: 382 QDGFKRLIEAVDLCELEIIDVNFTRLDLTVMTVLN 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,212,742
Number of Sequences: 28952
Number of extensions: 190502
Number of successful extensions: 543
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)