Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30535
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             111   5e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           99   3e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                98   7e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 82   5e-16
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.38 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              31   0.67 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.2  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     31   1.2  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               30   2.0  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)          28   8.2  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  111 bits (267), Expect = 5e-25
 Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
 Frame = +2

Query: 263 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 442
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 443 TREHALLAFTLGVKQLIVGVNK--WIPLNHHTVSP 541
           TREHA+L  +LGV QLIV +NK   + L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 42/83 (50%), Positives = 60/83 (72%)
 Frame = +2

Query: 260 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 439
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268

Query: 440 QTREHALLAFTLGVKQLIVGVNK 508
           QTREHA+LA T GVK L++ VNK
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNK 291



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +1

Query: 133 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 252
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 13/32 (40%), Positives = 24/32 (75%)
 Frame = +1

Query: 505 QMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 600
           +MD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 291 KMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 51/74 (68%), Positives = 54/74 (72%)
 Frame = +1

Query: 49  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 228
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+   S      +
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVLCFS-SCLLFM 59

Query: 229 DKLKAERESYHNRY 270
            KLK E    H  Y
Sbjct: 60  SKLKFELPCTHKIY 73


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 36/38 (94%), Positives = 37/38 (97%)
 Frame = +2

Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 370
           ITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 23  ITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 193 MGKGSFKYAWVLDKLKAERE 252
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 305 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 409
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 49  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 144
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 299 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 409
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 242 LSVSRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 394
           L+  RI   +   +F+     + IID PGH  F      G+S  D A+L+V
Sbjct: 659 LNAIRIQTKMVKEEFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +2

Query: 314 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 493
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 494 VGVNK 508
           +  NK
Sbjct: 123 ILQNK 127


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +2

Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 409
           I++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 65  ISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +2

Query: 257 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 400
           IT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 124 ITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 64  THINIVVIGHVDSGKSTTTGHLIY 135
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 73   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 171
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +1

Query: 514  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLELQPKCLGS 678
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E     + +
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIEFAGAVVRN 1121

Query: 679  RD 684
             D
Sbjct: 1122 ND 1123


>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
          Length = 663

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 166 EKFEKEAQEMGKGSFKYAWVLDKLKAERESY 258
           +++ K  +EM   + K  W  +KLKAE E++
Sbjct: 42  KEYSKLKEEMNSDAVKVKWAQNKLKAELEAH 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,009,566
Number of Sequences: 59808
Number of extensions: 467862
Number of successful extensions: 1313
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)