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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30534
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    81   2e-16
SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    80   3e-16
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    78   1e-15

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 36/55 (65%), Positives = 44/55 (80%)
 Frame = +1

Query: 520 IVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684
           I+KKRTK F RHQSDR+ ++  + RKPRGID+ VRRRF+G   MP IGYG+NKKT
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKT 60


>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 39/73 (53%), Positives = 52/73 (71%)
 Frame = -2

Query: 256 KKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 77
           +K IAR+  V ++  ++  R  YKNKKY PLDLR KKTRA+R+ALT +E   KT K+I+K
Sbjct: 50  RKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKK 109

Query: 76  KSLFPPRVYAVKA 38
           +  FP R YA+KA
Sbjct: 110 ERYFPLRKYALKA 122



 Score = 31.9 bits (69), Expect = 0.089
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 396 VKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVKK-LSHVFTL 229
           +K  ELR +               L +LRV K+ GG  SKLSKI+  +K ++ + T+
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTV 59


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 36/55 (65%), Positives = 43/55 (78%)
 Frame = +1

Query: 520 IVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684
           IVKKRTK F RHQSD + ++  + RKPRGID+ VRRRF+G   MP IGYG+NKKT
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKT 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,455
Number of Sequences: 5004
Number of extensions: 40555
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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