BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30534 (686 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 81 2e-16 SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce... 80 3e-16 SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 78 1e-15 >SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Schizosaccharomyces pombe|chr 1|||Manual Length = 127 Score = 80.6 bits (190), Expect = 2e-16 Identities = 36/55 (65%), Positives = 44/55 (80%) Frame = +1 Query: 520 IVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684 I+KKRTK F RHQSDR+ ++ + RKPRGID+ VRRRF+G MP IGYG+NKKT Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKT 60 >SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces pombe|chr 3|||Manual Length = 122 Score = 80.2 bits (189), Expect = 3e-16 Identities = 39/73 (53%), Positives = 52/73 (71%) Frame = -2 Query: 256 KKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 77 +K IAR+ V ++ ++ R YKNKKY PLDLR KKTRA+R+ALT +E KT K+I+K Sbjct: 50 RKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKK 109 Query: 76 KSLFPPRVYAVKA 38 + FP R YA+KA Sbjct: 110 ERYFPLRKYALKA 122 Score = 31.9 bits (69), Expect = 0.089 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -3 Query: 396 VKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVKK-LSHVFTL 229 +K ELR + L +LRV K+ GG SKLSKI+ +K ++ + T+ Sbjct: 3 LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTV 59 >SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosaccharomyces pombe|chr 2|||Manual Length = 127 Score = 78.2 bits (184), Expect = 1e-15 Identities = 36/55 (65%), Positives = 43/55 (78%) Frame = +1 Query: 520 IVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684 IVKKRTK F RHQSD + ++ + RKPRGID+ VRRRF+G MP IGYG+NKKT Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKT 60 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,314,455 Number of Sequences: 5004 Number of extensions: 40555 Number of successful extensions: 132 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 132 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 317927284 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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