Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30534
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 81 1e-15
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 81 1e-15
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 81 1e-15
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 61 9e-10
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 57 2e-08
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 42 6e-04
02_05_1321 - 35695474-35696161,35696315-35696547 29 2.6
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 29 3.5
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 28 6.0
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 28 6.0
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/55 (69%), Positives = 45/55 (81%)
Frame = +1
Query: 520 IVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684
IVKKR K+F R SDRY LK + R+P+GID+RVRR+FKG LMPNIGYGS+KKT
Sbjct: 10 IVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKT 64
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/55 (69%), Positives = 45/55 (81%)
Frame = +1
Query: 520 IVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684
IVKKR K+F R SDRY LK + R+P+GID+RVRR+FKG LMPNIGYGS+KKT
Sbjct: 10 IVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKT 64
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/55 (69%), Positives = 45/55 (81%)
Frame = +1
Query: 520 IVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684
IVKKR K+F R SDRY LK + R+P+GID+RVRR+FKG LMPNIGYGS+KKT
Sbjct: 332 IVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKT 386
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 60.9 bits (141), Expect = 9e-10
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 18/91 (19%)
Frame = -2
Query: 256 KKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKH------------ 113
+ +IARV V QK + LR YK K PLDLR KKTRA+R+ LTKH
Sbjct: 51 RTSIARVLTVISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTF 110
Query: 112 ------EAKIKTRKEIRKKSLFPPRVYAVKA 38
+ +KT +E +++ FP R YA+KA
Sbjct: 111 SMVAISQLSLKTEREKKREKYFPMRKYAIKA 141
Score = 44.4 bits (100), Expect = 9e-05
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = -3
Query: 405 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVK-KLSHVFTL 229
M ++K ELR K+ L+ LRVAKVTGG +KLSKI+VV+ ++ V T+
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 228 CITRR*RSILETTTKTRN 175
I+++ R+ L K ++
Sbjct: 61 -ISQKQRAALREAYKKKS 77
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/31 (77%), Positives = 29/31 (93%)
Frame = +1
Query: 592 RKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684
R+P+GID+RVRR+FKG LMPNIGYGS+KKT
Sbjct: 101 RRPKGIDSRVRRKFKGCTLMPNIGYGSDKKT 131
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 520 IVKKRTKRFIRHQSDRYDKLK 582
IVKKR K+F R SDRY LK
Sbjct: 10 IVKKRVKQFKRPHSDRYLCLK 30
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = -2
Query: 217 KMKVNLRNHYKNKKYK--PLDLRAKKTRAMRKALTKHEAKI 101
K++ LR YK KK PLDLR KKT A+R+ LTKH+ +
Sbjct: 155 KVRTALREAYKKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = -3
Query: 417 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVKKLSHV 238
VTV M ++K LR ++ L+ LRVA+VTGG +KLS I+V L
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIKVRTALREA 163
Query: 237 F 235
+
Sbjct: 164 Y 164
>02_05_1321 - 35695474-35696161,35696315-35696547
Length = 306
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 651 HQVLTFESPADSVVN--TSRFTQIPLKFVIAIRLMPDKSLRPLFDDCRPVTGLIAIL 487
H+ L F SPA + + +S T +PL + I L+ + +DCRP G IL
Sbjct: 10 HRPLLFSSPASASASAASSIRTYLPLAQIFLIFLLLSSFVFKAVNDCRPKVGSSNIL 66
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -2
Query: 208 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKKSLFPPRVYAVKA 38
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K P + Y +A
Sbjct: 230 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKD--PAKKYPHRA 286
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 208 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 74
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 208 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 74
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,436,471
Number of Sequences: 37544
Number of extensions: 242292
Number of successful extensions: 631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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