Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30534
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   1e-22
SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)         77   2e-14
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)                   29   2.7  
SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)                   29   3.5  
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)                       28   6.2  
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)                28   6.2  
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)                  28   6.2  
SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  103 bits (248), Expect = 1e-22
 Identities = 46/58 (79%), Positives = 52/58 (89%)
 Frame = +1

Query: 511 RPTIVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684
           RP I+KKR K+FIRHQSDRY ++  + RKP+GIDNRVRRRFKGQYLMPNIGYGSNKKT
Sbjct: 7   RPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKKT 64


>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 39/72 (54%), Positives = 49/72 (68%)
 Frame = -2

Query: 256 KKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 77
           +K++ARV  V  Q  + NLR  Y+ KKY PLDLR K TRAMR++LTK EA  KT K+ +K
Sbjct: 59  RKSVARVLTVVSQTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKK 118

Query: 76  KSLFPPRVYAVK 41
            + F  R YAVK
Sbjct: 119 LAHFSLRKYAVK 130



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 29/58 (50%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = -3

Query: 399 KVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVKK-LSHVFTL 229
           KVK  ELR K               L+ LRVAKVTGG ASKLSKI+VV+K ++ V T+
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTV 68


>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
          Length = 1052

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -3

Query: 561 RLMPDKSLRPLFDDCRPVTGLIAILYVSLRNATVNHAVTLFKVRFEENVTVK 406
           RL P+K LRP F +  PV  +   L+++  + + N  ++L +  FE   T K
Sbjct: 238 RLKPNKKLRPFFWNKVPVNLVPKSLWLNAEDQSANLDLSLLEDMFEVEETQK 289


>SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)
          Length = 454

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = -2

Query: 259 CKKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIR 80
           CK   +  +     K K   R   +NK Y  +DL+ +++ A+     K     +  + IR
Sbjct: 4   CKSVRSSDFDEQDDKWKRQTRGKQENKLYSFVDLKGEQSDALLVEAFKKGGLDEVNRLIR 63

Query: 79  KKSLFPPRVY 50
           ++ +F P +Y
Sbjct: 64  EEGVFLPYLY 73


>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 426

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 253 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 140
           KA ++V +  H   K NL +H+K K+Y P+  R  + R
Sbjct: 70  KAYSKVRVDNHLFNKENLPSHFKFKEYCPMVFRNLRER 107


>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
          Length = 890

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 482 TYKMAIRPVTGRQSSKRGRR-DLSGINRIAMTNLRGICVNLE 604
           T+   +R  +GR  S RGR+  +S + R+A++N R + V  E
Sbjct: 624 TFHQRLRDPSGRTGSSRGRKVIMSVLERLAVSNRRNMFVYRE 665


>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
          Length = 311

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 187 KNKKYKPLDLRAKKTR-AMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 47
           +N+K    DL  K T  +M  +  KH AK+  R E++  S  PP V A
Sbjct: 104 ENEKLWLSDLVEKSTPCSMDNSRQKHIAKLLLRSEMKGNSELPPHVQA 151


>SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 482 TYKMAIRPVTGRQSSKRGRR-DLSGINRIAMTNLRGICVNLE 604
           T+   +R  +GR  S RGR+  +S + R+A++N R + V  E
Sbjct: 100 TFHQRLRDPSGRTGSSRGRKVIMSVLERLAVSNRRNMFVYRE 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,291,490
Number of Sequences: 59808
Number of extensions: 310708
Number of successful extensions: 1728
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)