Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30534
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    75   5e-14
L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...    68   7e-12
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    29   2.4  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    29   2.4  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 31/55 (56%), Positives = 44/55 (80%)
 Frame = +1

Query: 520 IVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684
           +VKK+  +F RH+SDRY ++  + RKP+GIDNRVRRRF+G   MP IG+GS+++T
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRT 65


>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 34/73 (46%), Positives = 46/73 (63%)
 Frame = -2

Query: 256 KKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 77
           +K IAR+  V +Q  K  LR  Y + KYKP+DLR KKTRA+R+ LT HE  +++ K+  K
Sbjct: 51  RKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAK 110

Query: 76  KSLFPPRVYAVKA 38
                 R +AVKA
Sbjct: 111 SRNQAVRKFAVKA 123



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 26/52 (50%), Positives = 30/52 (57%)
 Frame = -3

Query: 405 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVKK 250
           M K+KC  LR +               L  LRV+KVTGG ASKLSKIRVV+K
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRK 52


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 187 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 74
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 268 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 187 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 74
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 187 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 74
           K   ++ +D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 226 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKK 74
           + QK K  ++   K+KK K    + KK +   K   K + + + R+E RKK
Sbjct: 288 FEQKKKKKVKKSKKSKKDKK---KEKKEKKKSKKANKEKEERRARREQRKK 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,773,675
Number of Sequences: 27780
Number of extensions: 226124
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)