Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30534
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   123   2e-30
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.3  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  123 bits (296), Expect = 2e-30
 Identities = 55/59 (93%), Positives = 57/59 (96%)
 Frame = +1

Query: 508 YRPTIVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684
           YRPTIVKKRTK+FIRHQSDRY KLKRN RKP+GIDNRVRRRFKGQYLMPNIGYGSNKKT
Sbjct: 7   YRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKKT 65


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 184 NKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 77
           NK+  P   +    +  RK  T  +  I +RKE +K
Sbjct: 778 NKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKK 813


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 72  DFFLISFLVLIFASCLVRALRIARVFLALKSK 167
           DF + S L   +  C++       +F AL+++
Sbjct: 342 DFIIYSSLSSFYIPCIIMVFLYYNIFKALRNR 373


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 413 VTFSSKRTLKRVTA 454
           + ++ KRTLKRV A
Sbjct: 142 INYAQKRTLKRVLA 155


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 413 VTFSSKRTLKRVTA 454
           + ++ KRTLKRV A
Sbjct: 142 INYAQKRTLKRVLA 155


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 413 VTFSSKRTLKRVTA 454
           + ++ KRTLKRV A
Sbjct: 142 INYAQKRTLKRVLA 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,586
Number of Sequences: 438
Number of extensions: 2688
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)