Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30534
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 86 2e-17
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 85 3e-17
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 85 4e-17
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 84 7e-17
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 84 7e-17
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B) 79 2e-15
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B) 79 2e-15
At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo... 79 2e-15
At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof... 29 2.9
At1g33340.1 68414.m04125 epsin N-terminal homology (ENTH) domain... 28 5.0
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 27 8.8
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 85.8 bits (203), Expect = 2e-17
Identities = 41/72 (56%), Positives = 52/72 (72%)
Frame = -2
Query: 256 KKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 77
+K+IA+V V QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 76 KSLFPPRVYAVK 41
+ FP R YA+K
Sbjct: 111 EMYFPVRKYAIK 122
Score = 45.6 bits (103), Expect = 3e-05
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = -3
Query: 405 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVKK-LSHVFTL 229
M ++K ELR K L LRVAKVTGG +KLSKI+VV+K ++ V T+
Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 228 CITRR*RSILETTTKTR 178
I+++ +S L K +
Sbjct: 61 -ISQKQKSALREAYKNK 76
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 85.4 bits (202), Expect = 3e-17
Identities = 41/72 (56%), Positives = 52/72 (72%)
Frame = -2
Query: 256 KKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 77
+K+IA+V V QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 76 KSLFPPRVYAVK 41
+ FP R YA+K
Sbjct: 111 EMYFPIRKYAIK 122
Score = 45.6 bits (103), Expect = 3e-05
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = -3
Query: 405 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVKK-LSHVFTL 229
M ++K ELR K L LRVAKVTGG +KLSKI+VV+K ++ V T+
Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 228 CITRR*RSILETTTKTR 178
I+++ +S L K +
Sbjct: 61 -ISQKQKSALREAYKNK 76
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 85.0 bits (201), Expect = 4e-17
Identities = 41/72 (56%), Positives = 52/72 (72%)
Frame = -2
Query: 256 KKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 77
+K+IA+V V QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 76 KSLFPPRVYAVK 41
+ FP R YA+K
Sbjct: 111 EMYFPIRKYAIK 122
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = -3
Query: 405 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVKK-LSHVFTL 229
M ++K ELR K L LRVAKVTGG +KLSKI+VV+K ++ V T+
Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 228 CITRR*RSILETTTKTR 178
+++ +S L K +
Sbjct: 61 S-SQKQKSALREAYKNK 76
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 84.2 bits (199), Expect = 7e-17
Identities = 41/72 (56%), Positives = 51/72 (70%)
Frame = -2
Query: 256 KKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 77
+K+IA+V V QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 76 KSLFPPRVYAVK 41
FP R YA+K
Sbjct: 111 DMYFPIRKYAIK 122
Score = 45.2 bits (102), Expect = 4e-05
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = -3
Query: 405 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVKK-LSHVFTL 229
M ++K ELR K L +LRVAKVTGG +KLSKI+VV+K ++ V T+
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 228 CITRR*RSILETTTKTR 178
+++ +S L K +
Sbjct: 61 S-SQKQKSALREAYKNK 76
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 84.2 bits (199), Expect = 7e-17
Identities = 41/72 (56%), Positives = 51/72 (70%)
Frame = -2
Query: 256 KKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 77
+K+IA+V V QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 76 KSLFPPRVYAVK 41
FP R YA+K
Sbjct: 111 DMYFPIRKYAIK 122
Score = 45.2 bits (102), Expect = 4e-05
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = -3
Query: 405 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVKK-LSHVFTL 229
M ++K ELR K L +LRVAKVTGG +KLSKI+VV+K ++ V T+
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 228 CITRR*RSILETTTKTR 178
+++ +S L K +
Sbjct: 61 S-SQKQKSALREAYKNK 76
>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/55 (63%), Positives = 46/55 (83%)
Frame = +1
Query: 520 IVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684
+VKKR+ +FIR QSDR +K + R+P+GID+RVRR+FKG LMPN+GYGS+KKT
Sbjct: 10 VVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKT 64
>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/55 (63%), Positives = 46/55 (83%)
Frame = +1
Query: 520 IVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684
+VKKR+ +FIR QSDR +K + R+P+GID+RVRR+FKG LMPN+GYGS+KKT
Sbjct: 10 VVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKT 64
>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
ribosomal protein L32, human, PIR1:R5HU32
Length = 133
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/55 (63%), Positives = 46/55 (83%)
Frame = +1
Query: 520 IVKKRTKRFIRHQSDRYDKLKRNLRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKT 684
+VKKR+ +FIR QSDR +K + R+P+GID+RVRR+FKG LMPN+GYGS+KKT
Sbjct: 10 VVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKT 64
>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 366
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -2
Query: 229 VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 86
V H VN +H + YKPL++RA+ + +R A ++ +TRK+
Sbjct: 290 VTHVDWSVN--DHGHPRTYKPLEVRAELIQKLRSARPRYGDGNRTRKD 335
>At1g33340.1 68414.m04125 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to clathrin
assembly protein AP180 (GI:6492344) [Xenopus laevis]
Length = 374
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 546 KSLRPLFDDCRPVTGLIAILYVSLRNATVNHAVTL 442
+ LR L+D CR G+ ++ Y S++ +++H V L
Sbjct: 265 QDLRILYDKCRGFAGMKSLDYPSVQAISMDHIVAL 299
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 178 KYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 86
KY+P D AKK R ++KA + E K K+
Sbjct: 93 KYRPEDKAAKKERLVKKAQAEAEGKPSESKK 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,033,398
Number of Sequences: 28952
Number of extensions: 210919
Number of successful extensions: 647
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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