Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30533
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    69   9e-13
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    29   0.94 
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    28   1.6  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.6  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    27   3.8  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   5.0  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    26   5.0  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    26   5.0  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    26   5.0  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   6.6  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   6.6  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.7  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    25   8.7  

>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score = 68.5 bits (160), Expect = 9e-13
 Identities = 37/78 (47%), Positives = 45/78 (57%)
 Frame = +1

Query: 22  KRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHC 201
           +++K+H    H   R RV  R  DLD+I  DL E  +EK     +D DLPG  QHYC+ C
Sbjct: 6   RKRKHHSNGNHALFRTRVYGR--DLDQIHNDLTE--SEKFDKLPIDPDLPGLGQHYCIEC 61

Query: 202 ARYFIDEQALNDHFKTKV 255
           ARYF   QAL  H K KV
Sbjct: 62  ARYFDSSQALLVHKKGKV 79



 Score = 38.7 bits (86), Expect = 9e-04
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = +3

Query: 249 KSHKRRLKALELEPYTIEESERAAGHGSFKKATKRKIVSQN 371
           K HKRRLK L  EPYT EE+E A   G  K++   K+   +
Sbjct: 78  KVHKRRLKNLREEPYTQEEAEAAVNIGQPKQSVASKLADNS 118


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 513 RYSALFINGA--KATENYVYVTPYLDFPEKFQNINNIKDDLKKRKYHYNFE 659
           R S L +  +  K  +     +P+ D P   Q I N   D+ +R++H   E
Sbjct: 644 RVSTLLVTDSISKCIDEITKASPFADHPAAMQYIMNAAQDILRRRFHATSE 694


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 304 SQRELLATGVS---KKQQNEKLFHKILRNLKQMKMVML 408
           S  E+L+ G     +KQQ EKL  K LR LK+M +  L
Sbjct: 155 SDDEILSEGEEDALQKQQEEKLSKKKLRKLKRMTVAQL 192


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 172 LADLNQLFGSVIFQHFLPLNLGLFHP 95
           L +L  LF      +FLPL +GLF+P
Sbjct: 73  LVELLSLFYCAYVMYFLPLEVGLFNP 98


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 521 SSFHQWCQGNRKLCLCHSIFRLSRKISEH 607
           S+F  W      +CLCH IFRL+ K   H
Sbjct: 443 SNFFTW----GSICLCHIIFRLAFKKQGH 467


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +1

Query: 514 DIQLFSSMVPRQQKIMFMSLHI*TFQKNFR 603
           ++++F +M+ +Q  + + +LH+  F+ NFR
Sbjct: 342 EVKVFGAMLNQQLNLHYEALHLNQFRLNFR 371


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +1

Query: 100 EIDQDLKEENA----EKLLNQKVDLDLPGA 177
           E+D + KEEN     EKL N KVD + P A
Sbjct: 121 EVDAEPKEENKKEIPEKLKNVKVDTENPSA 150


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 100 EIDQDLKEENAEKLLNQKVDLDLP 171
           EID D+K+E  + L  QK+  ++P
Sbjct: 189 EIDSDIKDEKQKSLEEQKIAPEIP 212


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 240 FQDKSHKRRLKALELEPYTIEESERAAGHGSFKKATKRKIVSQNIEKSQTDEDGDAILEE 419
           F D   KR+L+  +LE    EE E   G    K   +    ++N +K   +E   +++E 
Sbjct: 165 FSDDIMKRKLETEKLEANNKEEKEEKEGKDD-KDDKEDSNDTKNDKKISKNEVDSSLIEA 223

Query: 420 SP 425
           SP
Sbjct: 224 SP 225


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 166 DLNQLFGSVIFQHFLPLNLGLFHPNLSFCY 77
           DL+++ G V +  ++ L +GLF   + F Y
Sbjct: 439 DLDEIVGMVFYGRYIVLLMGLFSMYVGFVY 468


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 386 LRFLNIL*NNFSFCCFFETPVASSSL*LFYSIRFKLECF 270
           LR  ++L   +   CF + PV   +L +FY+  + L+C+
Sbjct: 308 LRNESLLDKGYQLPCFAKNPVTGKALPIFYA-PYVLDCY 345


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 76  RNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGA 177
           + R+K +++   D    +A+K++NQ++ + LP A
Sbjct: 300 KQRRKKVEQEVSDKGWVSADKMINQRLSIFLPSA 333


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 552 ENYVYVTPYLDFPEKFQNINNIKDDLKKRK 641
           E + +    +D  ++FQNI N +D+L+ +K
Sbjct: 97  ERWQFNVEMVDTADQFQNIGNKEDELRVQK 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,417
Number of Sequences: 5004
Number of extensions: 54111
Number of successful extensions: 226
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)