Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30533
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-17|CAB60500.1|  128|Caenorhabditis elegans Hypothetical...    73   2e-13
AF039048-3|AAK68334.1|  246|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z82280-6|CAB05267.2|  460|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC006662-5|AAF39894.1|  501|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AL132860-17|CAB60500.1|  128|Caenorhabditis elegans Hypothetical
           protein Y56A3A.18 protein.
          Length = 128

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 31/56 (55%), Positives = 40/56 (71%)
 Frame = +1

Query: 88  KDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKV 255
           KDLD+I +DLK E A KLL Q++D DLPG  Q YC+ C R+F+DE+    H KTK+
Sbjct: 21  KDLDQIHEDLKPEKAAKLLQQEIDYDLPGNGQFYCIECERHFVDEKTRQLHRKTKL 76



 Score = 31.5 bits (68), Expect = 0.66
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 249 KSHKRRLKALELEPYTIEESERAAGHGSFKKAT 347
           K HK R+K L+  PYT  E+  A G G F   T
Sbjct: 75  KLHKNRVKTLKEVPYTQAEANAAGGSGFFPAIT 107


>AF039048-3|AAK68334.1|  246|Caenorhabditis elegans Hypothetical
           protein F16B4.6 protein.
          Length = 246

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 25  RKKYHCGDTHLKKRWRVRNRK-KDLDEIDQDLKEENAEKLLNQKV 156
           R+K H  +       + R R   DLD+I +DLK E A KLL ++V
Sbjct: 128 REKCHVEERKHTISNKARKRPGTDLDQIHEDLKPEKAAKLLQKEV 172


>Z82280-6|CAB05267.2|  460|Caenorhabditis elegans Hypothetical
           protein R05A10.6 protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 558 YVYVTPYLDFPEKFQNINNIKDDLKKRKYHYNFEN*KTFGTFMRN*DK 701
           +V+V    DFP KF+N   ++ +L  +KY+    N  T   F+   DK
Sbjct: 301 HVHVIQNDDFPAKFENRTQLEKELIFKKYNKTTSNQITGSKFIIRPDK 348


>AC006662-5|AAF39894.1|  501|Caenorhabditis elegans Hypothetical
           protein H23L24.2 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 124 ENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKV 255
           EN E+  NQKV L L G      L CA     E+ L +  + ++
Sbjct: 134 ENEEQNQNQKVILSLDGGGLRVVLQCAILLAVERELGEPLRNRI 177


>Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical
           protein F29C12.1b protein.
          Length = 590

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 139 LLNQKVDLDLPGAAQHYCLHCARYFID 219
           LL+     DLP  A+  C+HCA  FID
Sbjct: 16  LLSTYTLADLPSCARAKCVHCAVDFID 42


>Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical
           protein F29C12.1a protein.
          Length = 592

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 139 LLNQKVDLDLPGAAQHYCLHCARYFID 219
           LL+     DLP  A+  C+HCA  FID
Sbjct: 16  LLSTYTLADLPSCARAKCVHCAVDFID 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,487
Number of Sequences: 27780
Number of extensions: 300227
Number of successful extensions: 1163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)