Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30533
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ...    50   1e-06
At5g54460.1 68418.m06782 wound-responsive protein-related contai...    29   2.5  
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    29   2.5  
At3g25130.1 68416.m03138 expressed protein                             29   2.5  
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff...    29   3.3  
At1g54920.2 68414.m06269 expressed protein                             29   3.3  
At1g54920.1 68414.m06270 expressed protein                             29   3.3  
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ...    28   5.8  
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote...    28   5.8  
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam...    28   7.6  
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila...    28   7.6  
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila...    28   7.6  
At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-conta...    28   7.6  
At1g28430.1 68414.m03495 cytochrome P450, putative similar to cy...    28   7.6  

>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type,
           domain; weak similarity to Zinc finger protein T86
           (Swiss-Prot:O00488) [Homo sapiens]
          Length = 198

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 20/34 (58%), Positives = 24/34 (70%)
 Frame = +1

Query: 151 KVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTK 252
           ++D DLPG  Q YCLHC RYF +    +DHFKTK
Sbjct: 47  QLDEDLPGMGQFYCLHCDRYFSNVSVRDDHFKTK 80



 Score = 35.1 bits (77), Expect = 0.050
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 163 DLPGAAQHYCLHCARYFIDEQALNDHFKTK 252
           DLPG  Q  CL C R F +   ++ HFKTK
Sbjct: 131 DLPGMGQFNCLLCHRNFSNASVMDYHFKTK 160


>At5g54460.1 68418.m06782 wound-responsive protein-related contains
           weak similarity to KED [Nicotiana tabacum]
           gi|8096269|dbj|BAA95789
          Length = 141

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 4   QTDMTYKRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQK 153
           + D+   R+KY  G T LKK  +   RK   ++    +KEE AE +  +K
Sbjct: 73  ELDLQKGREKYK-GATRLKKEKKKWERKNKRNQSKSPVKEEGAEPVKEEK 121


>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
           Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 243 QDKSHKRRLKALELEPYTIEESERAAGHGSFKKATKRKIVSQNIEKSQTDE 395
           +DK  K + KA E+E    EE+E    HG  KK  KRK      E  + +E
Sbjct: 699 KDKKGKAKQKAEEIEVTGKEENETDK-HGKMKKERKRKKSESKKEGGEGEE 748


>At3g25130.1 68416.m03138 expressed protein 
          Length = 406

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 662 LEDLWHVYEELRQKRNQYEQQKDRLAKE 745
           ++ LW  YE   +K+ Q E++K +L K+
Sbjct: 305 MDQLWETYETQTEKKQQTEEEKKKLKKK 332


>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 871

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 58  KKRWRVRNRKKDLDEIDQ-DLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALN 234
           KK+  V  R   + E+D  DL     +  ++ K   +L  A Q   LH  RYF+ E +  
Sbjct: 433 KKKEEVEERT--MQEVDMADLSTHLPKSFISSKDVKNLIAACQ--ALHRVRYFLQENSSR 488

Query: 235 DHFK 246
           D FK
Sbjct: 489 DDFK 492


>At1g54920.2 68414.m06269 expressed protein
          Length = 890

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 22  KRKKYHCGDTHLKKRWRVRNRKKDLDEIDQ-DLKEENAEKLLNQKV 156
           K + YH    HL+K    R++  D DE+ + D + E+ + LLN  V
Sbjct: 582 KIELYHIALYHLEKLKEARDKAADSDEVQKCDSEIEDLQNLLNNDV 627


>At1g54920.1 68414.m06270 expressed protein
          Length = 430

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 22  KRKKYHCGDTHLKKRWRVRNRKKDLDEIDQ-DLKEENAEKLLNQKV 156
           K + YH    HL+K    R++  D DE+ + D + E+ + LLN  V
Sbjct: 246 KIELYHIALYHLEKLKEARDKAADSDEVQKCDSEIEDLQNLLNNDV 291


>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
           protein low similarity to glycine-rich RNA-binding
           protein [Euphorbia esula] GI:2645699; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 337

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/106 (19%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
 Frame = +1

Query: 235 DHFKTKVINGD*KHSSLNLI-L*KSQRELLATGVSKKQQNEKLFHKILRNLKQMKMVMLF 411
           DHF     +   K     LI + ++ R+ +     + +  E +  ++ +  K+++ +++ 
Sbjct: 218 DHFSNSSGDHQVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLIN 277

Query: 412 *RKVQTKRRKLMTMIYKTYFYTLFKTRNLLVTQKDIQLFSSMVPRQ 549
            +K+ ++RRK +  ++K+Y      T NL   ++++QL  +   R+
Sbjct: 278 EKKLVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLVNSAARE 323


>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
            kinase, putative similar to brassinosteroid insensitive
            protein
          Length = 1143

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 31   KYHCGDTHLKKRWRVRNRK-KDLDEIDQDLKEENAEKLLNQK 153
            K   GDT+L    +++ R+ K ++ ID+DL +E + + LN+K
Sbjct: 1045 KEEFGDTNLVGWSKMKAREGKHMEVIDEDLLKEGSSESLNEK 1086


>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 883

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 22  KRKKYHCGDTHLKK--RWRVRNRKKDLDEIDQDLKEE 126
           +RKK     T L +  + RVRN KK +DE D D  ++
Sbjct: 275 RRKKCSVAKTRLTRGRKRRVRNTKKGVDEDDDDFVDD 311


>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 91  DLDEIDQDLKEENAEKLLNQKVDLDLPG 174
           DL+  +Q+LK E  +  +NQ V +D+ G
Sbjct: 29  DLENTNQELKSELKDLYINQAVQMDISG 56


>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 91  DLDEIDQDLKEENAEKLLNQKVDLDLPG 174
           DL+  +Q+LK E  +  +NQ V +D+ G
Sbjct: 29  DLENTNQELKSELKDLYINQAVQMDISG 56


>At1g61770.1 68414.m06966 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9UBS4 DnaJ
           homolog subfamily B member 11 precursor Homo sapiens;
           contains Pfam profile PF00226 DnaJ domain
          Length = 300

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 55  LKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGA 177
           L++   V N+KK   +IDQ L+EE     L+ ++DL + GA
Sbjct: 167 LERTGGVSNKKKGSKQIDQKLQEE-----LSNELDLQIKGA 202


>At1g28430.1 68414.m03495 cytochrome P450, putative similar to
           cytochrome P450 (CYP93A1) GI:1435059 from [Glycine max]
          Length = 521

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/54 (27%), Positives = 32/54 (59%)
 Frame = -1

Query: 181 VLLLADLNQLFGSVIFQHFLPLNLGLFHPNLSFCYALSTAFLNVCRHNDISCAY 20
           +LL A +++ F  +  ++   L+L +FH  +    + STA+ ++ + NDI+ +Y
Sbjct: 55  LLLFASIHKCFQKISSKYGPFLHLRIFHVPIVLVSSASTAY-DIFKTNDINVSY 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,770,817
Number of Sequences: 28952
Number of extensions: 261177
Number of successful extensions: 927
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)