Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30532
(714 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 178 1e-43
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 109 7e-23
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 95 2e-18
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 90 6e-17
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 85 1e-15
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 85 1e-15
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 85 2e-15
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 80 5e-14
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 80 5e-14
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 79 8e-14
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 79 1e-13
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 78 2e-13
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 78 2e-13
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 75 1e-12
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 74 3e-12
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 74 4e-12
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 72 2e-11
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 70 5e-11
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 69 2e-10
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 66 8e-10
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 64 3e-09
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 60 5e-08
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 54 3e-06
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 52 2e-05
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 47 4e-04
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 46 0.001
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 42 0.020
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 41 0.035
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.061
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 40 0.080
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.080
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 36 1.3
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 35 2.3
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 4.0
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 34 4.0
UniRef50_Q9VHM8 Cluster: CG8136-PB, isoform B; n=3; Drosophila m... 34 4.0
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 5.3
UniRef50_Q95Y36 Cluster: Putative uncharacterized protein; n=1; ... 33 7.0
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 178 bits (434), Expect = 1e-43
Identities = 84/85 (98%), Positives = 85/85 (100%)
Frame = +2
Query: 254 ESFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLL 433
+SFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLL
Sbjct: 93 KSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLL 152
Query: 434 VTGPFAFNSCPLRRIPQRYVIGTST 508
VTGPFAFNSCPLRRIPQRYVIGTST
Sbjct: 153 VTGPFAFNSCPLRRIPQRYVIGTST 177
Score = 113 bits (272), Expect = 4e-24
Identities = 55/69 (79%), Positives = 55/69 (79%)
Frame = +1
Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
RISLGNFKLPKHFNDDYF EGDDIFATKKEKYVPSEQRKTDQKTVDE
Sbjct: 178 RISLGNFKLPKHFNDDYFKKNKKCVKRTVKRKEGDDIFATKKEKYVPSEQRKTDQKTVDE 237
Query: 688 AVIKAIGAR 714
AVIKAIGAR
Sbjct: 238 AVIKAIGAR 246
Score = 109 bits (261), Expect = 9e-23
Identities = 53/71 (74%), Positives = 54/71 (76%)
Frame = +3
Query: 69 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLK 248
NYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGTRTVPLK
Sbjct: 31 NYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVPLK 90
Query: 249 RRSPSTPLRRK 281
RR P + K
Sbjct: 91 RRKSFYPTQEK 101
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 109 bits (262), Expect = 7e-23
Identities = 53/83 (63%), Positives = 62/83 (74%)
Frame = +2
Query: 263 YPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTG 442
YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL+ +L SGLLLVTG
Sbjct: 88 YPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTG 147
Query: 443 PFAFNSCPLRRIPQRYVIGTSTE 511
PFA NSCPLRR+ QRYVIGTS++
Sbjct: 148 PFALNSCPLRRVSQRYVIGTSSK 170
Score = 63.7 bits (148), Expect = 4e-09
Identities = 32/68 (47%), Positives = 41/68 (60%)
Frame = +1
Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
++ LG FK+P+H ND YF DIFA KKE++VP+EQRK DQK VD
Sbjct: 170 KVDLGAFKVPEHLNDAYFRRLKAKKDKKTGEA---DIFAAKKERFVPNEQRKKDQKEVDA 226
Query: 688 AVIKAIGA 711
A++K I A
Sbjct: 227 ALLKVIKA 234
Score = 47.6 bits (108), Expect = 3e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 69 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLK 248
N L G++R+SK++M+ ++A Y+ VK+IGG KNGG RTV LK
Sbjct: 23 NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLK 82
Query: 249 RRSPSTPLR 275
+ S P +
Sbjct: 83 KSKASYPTK 91
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 95.1 bits (226), Expect = 2e-18
Identities = 46/86 (53%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
Frame = +2
Query: 260 FYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLL 433
+YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRVV + L SGLLL
Sbjct: 115 YYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLL 174
Query: 434 VTGPFAFNSCPLRRIPQRYVIGTSTE 511
VTGP N PLRR Q++VI TST+
Sbjct: 175 VTGPLVLNRVPLRRTHQKFVIATSTK 200
Score = 51.6 bits (118), Expect = 2e-05
Identities = 29/68 (42%), Positives = 37/68 (54%)
Frame = +1
Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
+I + N K+PKH D YF EG+ IF T+KEKY +EQRK DQK VD
Sbjct: 200 KIDISNVKIPKHLTDAYFKKKKLRKPRHQ---EGE-IFDTEKEKYEITEQRKIDQKAVDS 255
Query: 688 AVIKAIGA 711
++ I A
Sbjct: 256 QILPKIKA 263
Score = 43.6 bits (98), Expect = 0.005
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Frame = +3
Query: 78 LGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 245
L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR V L
Sbjct: 50 LVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKL 109
Query: 246 K---RRSPSTPLRRKSVLH 293
+ R P+ + RK + H
Sbjct: 110 RKMPRYYPTEDVPRKLLSH 128
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 89.8 bits (213), Expect = 6e-17
Identities = 43/67 (64%), Positives = 51/67 (76%)
Frame = +2
Query: 308 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 487
FS HVR+IR +++ GTV ILLAG H GKRV+ + L SGLLLVTGPF +N PLRR+ Q
Sbjct: 80 FSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLKALKSGLLLVTGPFKYNGVPLRRVNQC 139
Query: 488 YVIGTST 508
YVI TST
Sbjct: 140 YVIATST 146
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +1
Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
RI + F +PKH +D+YF + +F+T+ +KY S+ RK DQK VD
Sbjct: 147 RIDISKFDVPKHIDDEYFRRVDLKESKT----DAGKLFSTETKKYTVSDIRKEDQKLVDN 202
Query: 688 AVIKAI 705
+ AI
Sbjct: 203 QIRAAI 208
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 85.4 bits (202), Expect = 1e-15
Identities = 49/96 (51%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Frame = +2
Query: 224 GNQNSTPQT*ES-FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVV 400
G + P ES +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV
Sbjct: 62 GGKRVVPVQRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVV 119
Query: 401 LVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTST 508
+ L SGLLLVTGPF N PLRRIPQ YVI TST
Sbjct: 120 FLKQLNSGLLLVTGPFKINGVPLRRIPQSYVIATST 155
Score = 45.6 bits (103), Expect = 0.001
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 69 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLK 248
N +L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP++
Sbjct: 12 NPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPVQ 70
Query: 249 RRS---PSTPLRRK 281
R S P+ +RR+
Sbjct: 71 RESRYYPTEDVRRR 84
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 511 ISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
I + + KLP+H F D+ + +D+F E+ PSEQR DQK VD+
Sbjct: 157 IDVSDVKLPEHAFADESYFKGEPKKKK-----RSEDMFEEAAEEKKPSEQRIADQKAVDD 211
Query: 688 AVIKAIGA 711
++ I A
Sbjct: 212 QILPKISA 219
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 85.4 bits (202), Expect = 1e-15
Identities = 42/67 (62%), Positives = 48/67 (71%)
Frame = +2
Query: 308 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 487
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 488 YVIGTST 508
YVI T T
Sbjct: 146 YVIATKT 152
Score = 41.9 bits (94), Expect = 0.015
Identities = 24/65 (36%), Positives = 33/65 (50%)
Frame = +1
Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
RI + N K+P ND++F D IFA +++KY S+ RK QK VD
Sbjct: 153 RIKIKNIKIPSQLNDEFFRRQDLKTKKSV-----DKIFAEEEKKYTVSDDRKKLQKQVDT 207
Query: 688 AVIKA 702
A+I A
Sbjct: 208 ALIAA 212
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 84.6 bits (200), Expect = 2e-15
Identities = 42/73 (57%), Positives = 53/73 (72%)
Frame = +2
Query: 299 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 478
GR ++ V ++R +LK G V ILL G + GKRVVL+ +L SGLLLVTGPF+FN PLRR+
Sbjct: 31 GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVLKSGLLLVTGPFSFNGVPLRRV 89
Query: 479 PQRYVIGTSTEFH 517
RYVI TST +
Sbjct: 90 NSRYVIATSTNVY 102
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 80.2 bits (189), Expect = 5e-14
Identities = 39/85 (45%), Positives = 56/85 (65%)
Frame = +2
Query: 254 ESFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLL 433
+ +YP ++ + + + H ++RP+L+ GT+ ILLAGR GKRV+L+ L G+LL
Sbjct: 31 QKWYPADDEPQPKKARK--TAHPTKLRPSLQPGTILILLAGRFRGKRVILLKHLGQGVLL 88
Query: 434 VTGPFAFNSCPLRRIPQRYVIGTST 508
VTGPF N PLRR+ RYVI TS+
Sbjct: 89 VTGPFKLNGVPLRRVNARYVIATSS 113
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 80.2 bits (189), Expect = 5e-14
Identities = 43/84 (51%), Positives = 56/84 (66%)
Frame = +2
Query: 260 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 439
FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L SGLLLVT
Sbjct: 64 FYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVT 121
Query: 440 GPFAFNSCPLRRIPQRYVIGTSTE 511
GPF N PLRR+ Q YVIGTST+
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTK 145
Score = 33.9 bits (74), Expect = 4.0
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +1
Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
++ + L K F+D YF EG+ A K+EK + +K DQK VD
Sbjct: 145 KVDISGVTLDK-FDDKYFGKVAEKKKKKT---EGEFFEAEKEEKKEIPQGKKDDQKAVDA 200
Query: 688 AVIKAIGA 711
A+IKAI A
Sbjct: 201 ALIKAIEA 208
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 79.4 bits (187), Expect = 8e-14
Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Frame = +2
Query: 263 YPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 436
YPT++ + + +S +P S+ +R + GTV ILLAG H GKRVV + L +GLL V
Sbjct: 92 YPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQLKTGLLPV 151
Query: 437 TGPFAFNSCPLRRIPQRYVIGTSTE 511
TGP+ N CPLRRI Q YVI TST+
Sbjct: 152 TGPYGVNGCPLRRINQIYVIATSTK 176
Score = 55.2 bits (127), Expect = 2e-06
Identities = 28/67 (41%), Positives = 36/67 (53%)
Frame = +3
Query: 69 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLK 248
N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R +PLK
Sbjct: 27 NHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPLK 86
Query: 249 RRSPSTP 269
+ S P
Sbjct: 87 KERRSYP 93
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 78.6 bits (185), Expect = 1e-13
Identities = 38/76 (50%), Positives = 52/76 (68%)
Frame = +2
Query: 284 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 463
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 464 PLRRIPQRYVIGTSTE 511
P+RR+ Y+I TST+
Sbjct: 80 PVRRVNPAYIIATSTK 95
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 78.2 bits (184), Expect = 2e-13
Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 436
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 437 TGPFAFNSCPLRRIPQRYVIGTSTE 511
TGPF N P+RR+ Q YVI TST+
Sbjct: 110 TGPFKINGVPIRRVNQPYVIATSTK 134
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 77.8 bits (183), Expect = 2e-13
Identities = 38/61 (62%), Positives = 46/61 (75%)
Frame = +2
Query: 329 IRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTST 508
+R ++ GTV I+LAGR AGKRVV + L SGL+L+TGPF N PLRRI QRYVI TST
Sbjct: 87 LRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATST 146
Query: 509 E 511
+
Sbjct: 147 K 147
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 75.4 bits (177), Expect = 1e-12
Identities = 40/83 (48%), Positives = 52/83 (62%)
Frame = +2
Query: 260 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 439
+YP +K + K + +RP++K GT+ ILLAG G RVV++ L SG LLVT
Sbjct: 46 WYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVILLAGVFRGSRVVVLKQLDSGQLLVT 104
Query: 440 GPFAFNSCPLRRIPQRYVIGTST 508
GP+A N PL R+ QRYVI TST
Sbjct: 105 GPYAVNRIPLTRVDQRYVIATST 127
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 74.1 bits (174), Expect = 3e-12
Identities = 40/83 (48%), Positives = 53/83 (63%)
Frame = +2
Query: 260 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 439
FYP + + +K+ +IR +L+ GT+ ILLAG + GKRVVL+ L SGLLLV+
Sbjct: 68 FYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILILLAGVNRGKRVVLLKALKSGLLLVS 127
Query: 440 GPFAFNSCPLRRIPQRYVIGTST 508
GP N PLRR+ Q+ VI TST
Sbjct: 128 GPLKVNRVPLRRVHQKLVIATST 150
Score = 58.8 bits (136), Expect = 1e-07
Identities = 32/69 (46%), Positives = 41/69 (59%)
Frame = +1
Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
RI + N K+P+H ND YF EGD IFA+K E+Y P+EQRK DQ VD
Sbjct: 151 RIDISNVKVPEHINDTYFRRHKVKKEAK----EGD-IFASKPERYTPTEQRKKDQAEVDV 205
Query: 688 AVIKAIGAR 714
++KAI A+
Sbjct: 206 QLLKAIKAQ 214
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 73.7 bits (173), Expect = 4e-12
Identities = 40/70 (57%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Frame = +2
Query: 302 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 475
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 476 IPQRYVIGTS 505
+ RYVI TS
Sbjct: 84 VNARYVIATS 93
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 71.7 bits (168), Expect = 2e-11
Identities = 38/105 (36%), Positives = 60/105 (57%)
Frame = +2
Query: 323 RRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGT 502
R++R ++++G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+ RY+I T
Sbjct: 68 RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVT 127
Query: 503 STEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKR 637
ST N + + I+SA + N + + S+ KKR
Sbjct: 128 STNIFDF-----NNLSQVKEKFIQSAERI--NDEIFIKSMDVKKR 165
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 70.1 bits (164), Expect = 5e-11
Identities = 38/60 (63%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 329 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 505
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/66 (37%), Positives = 37/66 (56%)
Frame = +1
Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
++++ K+P+H ND+YF G +IFA+ K +Y SEQRK D KTVD
Sbjct: 128 KVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKKDIKTVDA 181
Query: 688 AVIKAI 705
++ AI
Sbjct: 182 PILAAI 187
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 68.5 bits (160), Expect = 2e-10
Identities = 38/84 (45%), Positives = 54/84 (64%)
Frame = +2
Query: 260 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 439
+YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L LL++
Sbjct: 9 WYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLIS 66
Query: 440 GPFAFNSCPLRRIPQRYVIGTSTE 511
GPF N PLRR+ RYVI TST+
Sbjct: 67 GPFKVNGVPLRRVNARYVIATSTK 90
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 66.1 bits (154), Expect = 8e-10
Identities = 39/77 (50%), Positives = 48/77 (62%)
Frame = +2
Query: 281 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 460
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 461 CPLRRIPQRYVIGTSTE 511
PL+R+ YVI TST+
Sbjct: 98 VPLKRVNSAYVIPTSTK 114
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 64.1 bits (149), Expect = 3e-09
Identities = 40/86 (46%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +2
Query: 353 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTEFHSATSN 532
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q VI T T+
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTK----VDI 68
Query: 533 CQ-NTSMMITSRRIRSASNVQSNAKR 607
C+ TS +T + S Q+ A R
Sbjct: 69 CKVKTSKHLTDASFKKQSAAQAQAPR 94
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 60.1 bits (139), Expect = 5e-08
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = +2
Query: 329 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 505
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI RYVI TS
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATS 88
Query: 506 T 508
T
Sbjct: 89 T 89
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 54.4 bits (125), Expect = 3e-06
Identities = 27/66 (40%), Positives = 39/66 (59%)
Frame = +2
Query: 332 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTE 511
RP+LK+GTV I++ G H GKR V+V +G++ + GP P+ I Q Y+I TST
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDYLIATSTS 108
Query: 512 FHSATS 529
A +
Sbjct: 109 IEVAAN 114
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +2
Query: 389 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTE 511
KRVV + L SGLLL+TG F N PLRR+ Q YVI TST+
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTK 196
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 47.2 bits (107), Expect = 4e-04
Identities = 30/78 (38%), Positives = 43/78 (55%)
Frame = +2
Query: 275 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 454
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 455 NSCPLRRIPQRYVIGTST 508
N PL RI +RY++ TST
Sbjct: 65 NGIPLFRIDERYLLATST 82
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 45.6 bits (103), Expect = 0.001
Identities = 29/74 (39%), Positives = 41/74 (55%)
Frame = +2
Query: 305 PFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQ 484
P KH + + N TV I++ G+H +RVV + L G LL+TGP A N L R Q
Sbjct: 123 PAFKHEKAVC-NSTPETVLIIITGQH--RRVVFLKQLSRGFLLITGPLALNLVLLYRTHQ 179
Query: 485 RYVIGTSTEFHSAT 526
+ V+ TST ++ T
Sbjct: 180 KSVVITSTTINTQT 193
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 41.5 bits (93), Expect = 0.020
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +1
Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
+I + K+P DDYF E DIF K++Y ++ RK DQKT+D
Sbjct: 38 KIDVSGVKIPATMTDDYFKRTKYFGK------EKKDIFEQGKQEYTLTDARKADQKTIDT 91
Query: 688 AVIKAI 705
AV+ +I
Sbjct: 92 AVLGSI 97
Score = 34.7 bits (76), Expect = 2.3
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 425 LLLVTGPFAFNSCPLRRIPQRYVIGTSTE 511
L GPF+ N P+RRI Q++V+ TST+
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTK 38
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 40.7 bits (91), Expect = 0.035
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +2
Query: 335 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYV 493
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+ +++
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHI 53
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.061
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 332 RPNLKIGTVCILLAGRHAGKRVVLVGILP 418
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 39.5 bits (88), Expect = 0.080
Identities = 27/78 (34%), Positives = 43/78 (55%)
Frame = +2
Query: 233 NSTPQT*ESFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGI 412
++T + FYP + ++ + +K ++ +R ++ GTV I+LAGR VV +
Sbjct: 198 SNTEEKLPRFYPADD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQ 250
Query: 413 LPSGLLLVTGPFAFNSCP 466
L SGLLL+TG F N P
Sbjct: 251 LSSGLLLITGSFKINDVP 268
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.080
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 335 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 478
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 35.5 bits (78), Expect = 1.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 341 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 478
+ IG V + + GR AG++ V+V I+ +++TGP RR+
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRV 50
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 34.7 bits (76), Expect = 2.3
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 392 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR--YVIGTSTEFHS 520
+++++GI+P +L++ F F+S L IPQR +IGT+ S
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQRKTAIIGTAATITS 259
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 4.0
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 299 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 457
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 33.9 bits (74), Expect = 4.0
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 338 NLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 496
+ KIG + I+ + GK+ V +G G LL++G FN +I +YV+
Sbjct: 41 DFKIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVV 93
>UniRef50_Q9VHM8 Cluster: CG8136-PB, isoform B; n=3; Drosophila
melanogaster|Rep: CG8136-PB, isoform B - Drosophila
melanogaster (Fruit fly)
Length = 441
Score = 33.9 bits (74), Expect = 4.0
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +2
Query: 452 FNSCPLRRIPQRYVIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQK 631
+ P R + + V T+ H+ + NCQ + + ++ SA+N Q + SLPQ
Sbjct: 39 YRRLPSRSLNRSQVTDVPTKGHTTSENCQLPAQELETK---SATNEQGALGIMSVSLPQT 95
Query: 632 KRNTFHLSSA 661
RN+ H SSA
Sbjct: 96 TRNS-HQSSA 104
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 5.3
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 414 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 280
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_Q95Y36 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 685
Score = 33.1 bits (72), Expect = 7.0
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +2
Query: 458 SCPLRRIPQRYVIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKR 637
+ P R P R G S E + T N +N T+RR S+V NA + S+P++++
Sbjct: 492 NAPATRPPSRKAAGGSHEPRAKTPNQKNKDERPTTRR----SSVDKNAPKRNDSVPRERK 547
Query: 638 NTFHLSSAKP 667
++ +KP
Sbjct: 548 SSVSHDESKP 557
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,580,069
Number of Sequences: 1657284
Number of extensions: 13711816
Number of successful extensions: 36706
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 35242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36662
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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