Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30532
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 66 5e-12
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 31 0.16
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 28 1.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.5
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 8.1
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 8.1
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 66.1 bits (154), Expect = 5e-12
Identities = 33/60 (55%), Positives = 42/60 (70%)
Frame = +2
Query: 326 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTS 505
++R +L GTVCILLAGR GKRVV++ L L+VTGP+ N P+RR+ RYVI TS
Sbjct: 47 KLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATS 105
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 408 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 274
P S+ + P LP+RR +T I L ++ CLL P +R FS
Sbjct: 21 PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +2
Query: 536 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 673
+NTS +T IRS SN + K + T LP+ K+N F S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ TST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 2357 VVNTSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 2412
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ V +S P + L+S+ PI
Sbjct: 3149 VVNSSTPITSSTT--LNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSV--LNSSTPI 3204
Query: 671 RRQSTRL*SKP 703
+T S P
Sbjct: 3205 TSSTTLNTSTP 3215
Score = 27.1 bits (57), Expect = 2.7
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +2
Query: 434 VTGPFAFNSCPLRRIPQRYVIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVM 613
+T A N+ P I V+ +ST S+T NTS ITS + ++S +++ +
Sbjct: 1644 ITSSTALNTSP--PITSSTVVNSSTPITSST--VVNTSTPITSSTVVNSSTPITSSTALN 1699
Query: 614 TSLPQKKRNTFHLSSAKPI 670
TS P + L+S+ PI
Sbjct: 1700 TSTPITSSSV--LNSSTPI 1716
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSA 661
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + + S+A
Sbjct: 3293 VVNSSTPITSSTT--LNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTA 3347
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP 625
V+ TST S+T+ NTS ITS + ++S +++ V TS P
Sbjct: 1121 VVNTSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTVVNTSTP 1163
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP 625
V+ TST S+T+ NTS ITS + ++S +++ V TS P
Sbjct: 2765 VVNTSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTVVNTSTP 2807
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 521 VLNSSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 576
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + L+S+ PI
Sbjct: 677 VLNSSTPITSSTA--LNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSV--LNSSTPI 732
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + L+S+ PI
Sbjct: 701 VLNSSTAITSSTA--LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV--LNSSTPI 756
Query: 671 RRQS 682
S
Sbjct: 757 TSSS 760
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 1289 VLNSSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 1344
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 2297 VVNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 2352
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 2633 VLNSSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 2688
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 2705 VVNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 2760
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 2861 VLNSSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 2916
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ V TS P + L+S+ PI
Sbjct: 2957 VLNSSTPITSSTA--LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV--LNSSTPI 3012
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSA 661
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + + S+A
Sbjct: 653 VLNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTA 707
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + L+S+ PI
Sbjct: 1577 VVNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV--LNSSTPI 1632
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + L+S+ PI
Sbjct: 1745 VVNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV--LNSSTPI 1800
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + L+S+ PI
Sbjct: 1841 VVNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV--LNSSTPI 1896
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPI 670
V+ +ST S+T+ NTS ITS + ++S +++ + TS P + L+S+ PI
Sbjct: 2033 VVNSSTPITSSTA--LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV--LNSSTPI 2088
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +2
Query: 491 VIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSA 661
V+ +ST S+T+ NTS ITS + ++S +++ V +S P + + S+A
Sbjct: 3065 VLNSSTPITSSTA--LNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTA 3119
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 438 LDLLLSIRARYAVFLSAM*SAPPPNFTR 521
+D+ +++RY+ L + S PPN TR
Sbjct: 99 MDVFFEVQSRYSGALKEVSSNTPPNMTR 126
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 8.1
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Frame = +2
Query: 455 NSCPLRRIPQRYVIGTSTE---FHSATSNC--------QNTSMMITSRRIRSASNVQSNA 601
N+ PL P+ + + T+ FH +S N+S+ SR S ++ QSN
Sbjct: 12 NTPPLHSPPESHTFSSQTDDSYFHKPSSTGLFATLVADTNSSVPSASRSPESIASSQSND 71
Query: 602 KRVMTSLPQKKRNTFHLSSAKPIRRQSTR 688
+ S +K+R KP R+ R
Sbjct: 72 SAAIPSYRRKRRKVRKPEIVKPTLRKRGR 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,629
Number of Sequences: 5004
Number of extensions: 55798
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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