Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30532
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    78   8e-15
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    77   2e-14
08_01_0399 + 3524723-3525272,3525468-3525544,3526816-3526861,352...    31   1.2  
02_02_0470 - 10700092-10700505                                         30   2.1  
10_08_0951 - 21769342-21769752                                         29   4.8  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
 Frame = +2

Query: 260 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 436
           FYP  + K RA S  +    +  ++R  +  GTV ILLAGR+ GKRVV +  L SGLLL+
Sbjct: 50  FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 437 TGPFAFNSCPLRRIPQRYVIGTSTE 511
           TGPF  N  P+RR+ Q YVI TST+
Sbjct: 107 TGPFKINGVPIRRVNQAYVIATSTK 131



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKE--KYVPSEQRKTDQKTV 681
           ++ +   K+ K F+D YF              EG+ +F T+KE  K +P + +K DQK V
Sbjct: 131 KVDISGVKVDK-FDDKYFARDKKAKAKKT---EGE-LFETEKEATKNLP-DFKKDDQKAV 184

Query: 682 DEAVIKAI 705
           D  +IKAI
Sbjct: 185 DAELIKAI 192


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 43/84 (51%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
 Frame = +2

Query: 266 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 439
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L SGLLLVT
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 440 GPFAFNSCPLRRIPQRYVIGTSTE 511
           GPF  N  P+RR+ Q YVI TST+
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTK 154



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +1

Query: 613 DIFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGA 711
           ++F T+KE  K +P E +K DQK VD  +IKAI A
Sbjct: 184 ELFETEKEATKNLP-EFKKEDQKVVDAELIKAIEA 217


>08_01_0399 +
           3524723-3525272,3525468-3525544,3526816-3526861,
           3527121-3527235,3528252-3528306,3528432-3528557
          Length = 322

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 207 GGEKNGGTRTVPLKRRSPSTP-LRRKSVLHLVAVHSASMYAGSD 335
           GG   GG R V   +R+P  P +R  S LH   VH+  +  G D
Sbjct: 140 GGCGGGGARGVLPAKRAPRAPRMRWTSTLHARFVHAVELLGGHD 183


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 341 LKIGTVCILLAGRHAGKRVVLVGILPSG 424
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 341 LKIGTVCILLAGRHAGKRVVLVGILPSG 424
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,579,179
Number of Sequences: 37544
Number of extensions: 407180
Number of successful extensions: 980
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)