Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30532
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               37   0.014
SB_27497| Best HMM Match : Death (HMM E-Value=0.028)                   33   0.30 
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)                29   2.8  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 16/22 (72%), Positives = 16/22 (72%)
 Frame = +2

Query: 443 PFAFNSCPLRRIPQRYVIGTST 508
           PF  N  PLRRIPQ YVI TST
Sbjct: 2   PFKINGVPLRRIPQSYVIATST 23



 Score = 35.5 bits (78), Expect = 0.043
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 511 ISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
           I + + KLP+H F D+ +                +D+F    E+  PSEQR  DQK VD+
Sbjct: 25  IDVSDVKLPEHAFADESYFKGEPKKKK-----RSEDMFEEAAEEKKPSEQRIADQKAVDD 79

Query: 688 AVIKAIGA 711
            ++  I A
Sbjct: 80  QILPKISA 87


>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
          Length = 892

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 195 VKQIGGEKNGGTRTVPLKRRSPSTPLRRKSVLHLVAVHSASMYAGSDP 338
           VK++ G     TR VP++ ++   P +   V  LV  HS   Y GSDP
Sbjct: 257 VKEMLGLSPFATRDVPMRNKAIKLPKKAPPVF-LVCTHSDEPYEGSDP 303


>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
          Length = 204

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +2

Query: 437 TGPFAFNSCPLRRIPQRYVIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 616
           T   A N+C  RR  ++      T    AT+NC+  +  +   +  +A    +N +R   
Sbjct: 92  TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNE 149

Query: 617 SLPQKKRNT 643
            LP+ +R T
Sbjct: 150 QLPKAQRTT 158



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +2

Query: 437 TGPFAFNSCPLRRIPQRYVIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 616
           T   A N+C  RR  ++      T    AT+NC+  +  +   +  +A    +N +R   
Sbjct: 114 TAEGATNNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGTTNNCRRHNE 171

Query: 617 SLPQKKRNT 643
            LP+ +R T
Sbjct: 172 QLPKAQRTT 180



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +2

Query: 455 NSCPLRRIPQRYVIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKK 634
           N+C  RR  ++      T    AT+NC+  +  +   +  +A    +N +R    LP+ +
Sbjct: 76  NNC--RRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQ 133

Query: 635 RNTFHLSSAKPIRRQSTRL 691
           R T    +    RR++ +L
Sbjct: 134 RTTAE-GATNNCRRRNEQL 151


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 334 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCFQFVPATPYS 480
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,719,371
Number of Sequences: 59808
Number of extensions: 445720
Number of successful extensions: 1352
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)