Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30532
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    70   1e-12
AC024744-1|AAL00859.1|  685|Caenorhabditis elegans Hypothetical ...    33   0.20 
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 38/60 (63%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
 Frame = +2

Query: 329 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 505
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI TS
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/66 (37%), Positives = 37/66 (56%)
 Frame = +1

Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
           ++++   K+P+H ND+YF               G +IFA+ K +Y  SEQRK D KTVD 
Sbjct: 128 KVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKKDIKTVDA 181

Query: 688 AVIKAI 705
            ++ AI
Sbjct: 182 PILAAI 187



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 69  NYDLGNGVMRFSKSKMFHKKAKYK 140
           N+DL  GV+RFS S++  KK + K
Sbjct: 13  NFDLSPGVLRFSASRLRLKKGEKK 36


>AC024744-1|AAL00859.1|  685|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.3 protein.
          Length = 685

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = +2

Query: 458 SCPLRRIPQRYVIGTSTEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKR 637
           + P  R P R   G S E  + T N +N     T+RR    S+V  NA +   S+P++++
Sbjct: 492 NAPATRPPSRKAAGGSHEPRAKTPNQKNKDERPTTRR----SSVDKNAPKRNDSVPRERK 547

Query: 638 NTFHLSSAKP 667
           ++     +KP
Sbjct: 548 SSVSHDESKP 557


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 260 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 394
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical protein
            F23D12.2 protein.
          Length = 1322

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 219  NGGTRTVPLKRRSPSTPLRRKSVLHLVAVHSASMYAGSDPT*R*ELFA 362
            NGGT+ + L +  P TP+   SV+  V V S  +     P    EL A
Sbjct: 975  NGGTKGMSLSQTLPQTPIALSSVVESVEVISCKVSTEISPAKADELVA 1022


>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
           protein F31B12.2 protein.
          Length = 1089

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 572 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPS 706
           RSA +V+    +V+  + +  R + HLS+++PI  +S    S P+
Sbjct: 364 RSAVSVEGVLLKVLAEVAELVRQSQHLSASEPITEESPSAGSPPA 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,537
Number of Sequences: 27780
Number of extensions: 328693
Number of successful extensions: 808
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)