Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30532
(714 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 80 1e-15
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 80 1e-15
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 78 7e-15
At5g08320.1 68418.m00979 expressed protein predicted proteins, H... 29 4.0
At2g27270.1 68415.m03277 expressed protein 28 5.3
At3g62200.1 68416.m06988 expressed protein contains Pfam profile... 28 7.1
At1g34550.1 68414.m04294 expressed protein contains Pfam profile... 27 9.3
At1g27190.1 68414.m03312 leucine-rich repeat transmembrane prote... 27 9.3
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 80.2 bits (189), Expect = 1e-15
Identities = 43/84 (51%), Positives = 56/84 (66%)
Frame = +2
Query: 260 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 439
FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L SGLLLVT
Sbjct: 64 FYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVT 121
Query: 440 GPFAFNSCPLRRIPQRYVIGTSTE 511
GPF N PLRR+ Q YVIGTST+
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTK 145
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +1
Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
++ + L K F+D YF EG+ A K+EK + +K DQK VD
Sbjct: 145 KVDISGVTLDK-FDDKYFGKVAEKKKKKT---EGEFFEAEKEEKKEIPQGKKDDQKAVDA 200
Query: 688 AVIKAIGA 711
A+IKAI A
Sbjct: 201 ALIKAIEA 208
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 80.2 bits (189), Expect = 1e-15
Identities = 43/84 (51%), Positives = 56/84 (66%)
Frame = +2
Query: 260 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 439
FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L SGLLLVT
Sbjct: 64 FYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVT 121
Query: 440 GPFAFNSCPLRRIPQRYVIGTSTE 511
GPF N PLRR+ Q YVIGTST+
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTK 145
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +1
Query: 508 RISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDE 687
++ + L K F+D YF EG+ A K+EK + +K DQK VD
Sbjct: 145 KVDISGVTLDK-FDDKYFGKVAEKKKKKT---EGEFFEAEKEEKKEIPQVKKDDQKAVDA 200
Query: 688 AVIKAIGA 711
A+IKAI A
Sbjct: 201 ALIKAIEA 208
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 77.8 bits (183), Expect = 7e-15
Identities = 43/93 (46%), Positives = 58/93 (62%)
Frame = +2
Query: 260 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 439
FYP ++ ++ R K + ++ ++ GTV I+LAGR GKRVV + L SGLLLVT
Sbjct: 64 FYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVT 121
Query: 440 GPFAFNSCPLRRIPQRYVIGTSTEFHSATSNCQ 538
GPF N PLRR+ Q YVIGTST+ + N +
Sbjct: 122 GPFKINGVPLRRVNQAYVIGTSTKIDISGVNTE 154
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 604 EGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGA 711
EG+ A K+EK +++K DQKTVD A+IK+I A
Sbjct: 173 EGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEA 208
>At5g08320.1 68418.m00979 expressed protein predicted proteins, Homo
sapiens and Caenorhabditis elegans
Length = 150
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 502 GADHIALRNTA*RARIESKRSSN*KQTAGQNSNKYNPLACMSTSEE 365
G D + +NT + +R S ++T ++S K NP+ C + S E
Sbjct: 85 GTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTE 130
>At2g27270.1 68415.m03277 expressed protein
Length = 231
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 266 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 445
PT++K A G SKH R + + + C+ GK ++ G+ + +LL+
Sbjct: 21 PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73
Query: 446 FAFNSCPLR-RIPQ 484
FAFN ++ R+P+
Sbjct: 74 FAFNYIAIQPRVPR 87
>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 673
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 221 WGNQNSTPQT*ESFYPTQEKIRASSGGRPFSKHVRRIRP 337
W N NS P +++YP + A++ P+ R RP
Sbjct: 319 WNNGNSIPNHAQNYYPNAARPGAATMRPPYGNVFRPYRP 357
>At1g34550.1 68414.m04294 expressed protein contains Pfam profile
PF04765: Protein of unknown function (DUF616);
expression supported by MPSS
Length = 812
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 221 WGNQ--NSTPQT*ESFYPTQEKIRASSGGRPFSKHVRRIRPNLK 346
W N+ TP+ SF T +K+R + +PF+ H+ +IR K
Sbjct: 684 WFNEVERFTPRDQLSFAYTYQKLRRMNPDKPFNLHMFKIRREAK 727
>At1g27190.1 68414.m03312 leucine-rich repeat transmembrane protein
kinase, putative similar to CLV1 receptor kinase
GB:AAB58929 GI:2160756 from [Arabidopsis thaliana]
Length = 601
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +1
Query: 382 CRQEGCTCWNSAQRSAFSYWTFCFQFVPATPYSSALCDRHLHRISL-GN 525
C+ G +CWN + S Q P S LC R L + L GN
Sbjct: 59 CKLTGVSCWNEKENRIISLQLQSMQLAGEIPESLKLC-RSLQSLDLSGN 106
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,255,470
Number of Sequences: 28952
Number of extensions: 311225
Number of successful extensions: 823
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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