Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30531
(697 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 163 3e-39
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 113 5e-24
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 102 7e-21
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 101 2e-20
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 99 5e-20
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 94 3e-18
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 93 6e-18
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 91 2e-17
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 89 1e-16
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 83 8e-15
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 76 7e-13
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 76 1e-12
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 1e-10
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 65 1e-09
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 65 1e-09
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 65 2e-09
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 64 3e-09
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 62 1e-08
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 58 2e-07
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 58 2e-07
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 56 1e-06
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 55 2e-06
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 53 6e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 52 2e-05
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 51 2e-05
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 51 3e-05
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 50 4e-05
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 49 1e-04
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 47 5e-04
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 47 5e-04
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 43 0.006
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 43 0.008
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 42 0.014
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 42 0.014
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 42 0.019
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 42 0.019
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 40 0.044
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 40 0.058
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 38 0.24
UniRef50_Q2UIN9 Cluster: Predicted protein; n=1; Aspergillus ory... 37 0.54
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 37 0.54
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 36 0.72
UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC pre... 36 1.3
UniRef50_A0P432 Cluster: Putative uncharacterized protein; n=2; ... 36 1.3
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 2.9
UniRef50_UPI0000F1F8B1 Cluster: PREDICTED: hypothetical protein;... 34 3.8
UniRef50_A3LYD9 Cluster: Hypothetical transcription factor; n=1;... 34 3.8
UniRef50_UPI0000E23955 Cluster: PREDICTED: similar to heat shock... 33 5.1
UniRef50_UPI00005A065A Cluster: PREDICTED: similar to interferon... 33 5.1
UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613; ... 33 5.1
UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=... 33 6.7
UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus carot... 33 6.7
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 33 8.8
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 33 8.8
UniRef50_Q9VWU0 Cluster: CG15046-PA; n=2; Sophophora|Rep: CG1504... 33 8.8
UniRef50_Q4Q691 Cluster: Putative uncharacterized protein; n=3; ... 33 8.8
UniRef50_Q4FYZ9 Cluster: Putative uncharacterized protein; n=1; ... 33 8.8
UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 33 8.8
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 33 8.8
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 33 8.8
UniRef50_O94373 Cluster: ATP synthase subunit 4, mitochondrial p... 33 8.8
UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|... 29 9.8
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 163 bits (397), Expect = 3e-39
Identities = 79/84 (94%), Positives = 81/84 (96%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
VQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+
Sbjct: 73 VQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAK 132
Query: 436 GCEVVVSGKLRGQRAKSMKFVDGL 507
GCEVVVSGKLRGQRAKSMKFVDGL
Sbjct: 133 GCEVVVSGKLRGQRAKSMKFVDGL 156
Score = 126 bits (304), Expect = 5e-28
Identities = 63/72 (87%), Positives = 68/72 (94%)
Frame = +2
Query: 38 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 217
MAV ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VL
Sbjct: 1 MAVQ-ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59
Query: 218 GEKGRRIRELTS 253
GEKGRRIRELT+
Sbjct: 60 GEKGRRIRELTA 71
Score = 108 bits (260), Expect = 1e-22
Identities = 48/62 (77%), Positives = 52/62 (83%)
Frame = +3
Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEP 689
IHSGDP N YV+TA RHVLLRQGVLGIKVKIMLPWD GK GPKKP PDH+ + EPKDE
Sbjct: 158 IHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217
Query: 690 VP 695
+P
Sbjct: 218 LP 219
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 113 bits (271), Expect = 5e-24
Identities = 50/83 (60%), Positives = 67/83 (80%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
+Q+RFN E ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R++MESGA+
Sbjct: 124 LQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIRYVMESGAK 183
Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
GCEV + GK++GQRAKSM F DG
Sbjct: 184 GCEVTIGGKIKGQRAKSMTFRDG 206
Score = 97.9 bits (233), Expect = 2e-19
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +2
Query: 53 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 232
+SKKR V DGVF AEL EFL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 233 RIRELTS 253
RIRELT+
Sbjct: 116 RIRELTA 122
Score = 43.6 bits (98), Expect = 0.005
Identities = 26/57 (45%), Positives = 31/57 (54%)
Frame = +3
Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 680
I SG +V+TATRH LR G +G+ VKIM P Q + PD I V EPK
Sbjct: 209 IKSGTAHKHFVDTATRHCHLRAGTIGVNVKIMRP---QSMIEEDEVLPDVITVIEPK 262
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 102 bits (245), Expect = 7e-21
Identities = 47/83 (56%), Positives = 61/83 (73%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
+ KRF + + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLRF M +GA+
Sbjct: 74 IVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLRFAMGAGAK 133
Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
G EVV+SGKLR RAKS K+ DG
Sbjct: 134 GVEVVISGKLRAARAKSQKYADG 156
Score = 99 bits (238), Expect = 5e-20
Identities = 47/67 (70%), Positives = 55/67 (82%)
Frame = +2
Query: 53 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 232
+SKK+K V DGVF AELNEF TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 233 RIRELTS 253
RI ELTS
Sbjct: 66 RIHELTS 72
Score = 60.9 bits (141), Expect = 3e-08
Identities = 31/59 (52%), Positives = 39/59 (66%)
Frame = +3
Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 686
IHSG P D+++ A RHVL+RQGVLGIKVKIM + GP + PD + + E KDE
Sbjct: 159 IHSGQPTRDFIDIAIRHVLMRQGVLGIKVKIMKD-PAANRFGP-RALPDAVKIAEAKDE 215
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 101 bits (242), Expect = 2e-20
Identities = 42/83 (50%), Positives = 63/83 (75%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
+QKR+ + E S+E++ +++ +GL A+ Q ESLRYKLI + RRA Y ++RF+M++GAR
Sbjct: 74 IQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFVMDAGAR 133
Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
GCEV +SGKLRG RA + K+ +G
Sbjct: 134 GCEVAISGKLRGARASTSKYKEG 156
Score = 72.9 bits (171), Expect = 7e-12
Identities = 34/70 (48%), Positives = 46/70 (65%)
Frame = +2
Query: 38 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 217
M +K R+ + G+F AELNE LTREL ++GY G EVR TP R+EIII A T+ +
Sbjct: 1 MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFV 60
Query: 218 GEKGRRIREL 247
GRR++E+
Sbjct: 61 DNHGRRLQEV 70
Score = 55.2 bits (127), Expect = 1e-06
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +3
Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKD 683
+ SGD +V A H+ ++Q +GI+V IML D G +GPK+ QPD I V E KD
Sbjct: 159 VKSGDVTKQFVTQAVGHIPMKQATIGIRVLIMLAQDPSGISGPKESQPDVIKVHEAKD 216
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 99 bits (238), Expect = 5e-20
Identities = 51/81 (62%), Positives = 61/81 (75%)
Frame = +2
Query: 44 VNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 223
V +SKKRKF DGVF A LNE LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGE
Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61
Query: 224 KGRRIRELTSEYRSDSTFQSN 286
KG++I+ELTS + F N
Sbjct: 62 KGKKIKELTSVVQKRFEFLEN 82
Score = 65.3 bits (152), Expect = 1e-09
Identities = 31/56 (55%), Positives = 36/56 (64%)
Frame = +3
Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEP 677
I SG P DY++ A RHVL RQGVLGIKVKIM WD +GK P PD + + P
Sbjct: 132 ISSGQPVKDYIDLAVRHVL-RQGVLGIKVKIMFNWDPKGKQSLTTPLPDLVTIQTP 186
Score = 62.5 bits (145), Expect = 1e-08
Identities = 32/43 (74%), Positives = 34/43 (79%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAV 384
VQKRF E SVEL AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 73 VQKRFEFLENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM 115
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 94.3 bits (224), Expect = 3e-18
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +2
Query: 56 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 226
SKKR+FV DG+F+AELNEFLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 6 SKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
Score = 47.2 bits (107), Expect = 4e-04
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +1
Query: 415 IMESGARGCEVVVSGKLRGQRAKSMKFVD 501
+ ESGA+G E +VSGKL+GQRAKS KFVD
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVD 108
Score = 44.4 bits (100), Expect = 0.003
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = +3
Query: 504 TQIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQ 620
+ IHS D N YV+T+ HVLLRQGVLG K + P Q
Sbjct: 110 SMIHSRDCVNHYVDTSVHHVLLRQGVLGSKCRSCFPGTQ 148
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 93.1 bits (221), Expect = 6e-18
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
VQKRF E +VELYAEK R AIAQAESLR+KL+GGL VRRA YGVL F+MESG +
Sbjct: 127 VQKRFEFLENNVELYAEKFNNRVFYAIAQAESLRFKLLGGLVVRRAGYGVLSFVMESGTK 186
Query: 436 GCEVV 450
GCEV+
Sbjct: 187 GCEVI 191
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/50 (56%), Positives = 34/50 (68%)
Frame = +3
Query: 489 EVCRWTQIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 638
EV W I SG P DY+N+ RHVLL+QGVL IKVKI++ QG+ GP
Sbjct: 189 EVIGWYIISSGQPVKDYINSVVRHVLLKQGVLSIKVKIIVRLGSQGQAGP 238
Score = 44.0 bits (99), Expect = 0.004
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +2
Query: 179 EIIIMATRTQSVLGEKGRRIRELTSEYRSDSTFQSN 286
EIII AT+TQ+VLG+KGR+IRELTS + F N
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLEN 136
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 91.5 bits (217), Expect = 2e-17
Identities = 40/82 (48%), Positives = 60/82 (73%)
Frame = +1
Query: 262 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 441
+R +P++SVE+ EKV +GLCA+ QA +R K++GG+ RRA L+ + A+GC
Sbjct: 86 QRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGC 145
Query: 442 EVVVSGKLRGQRAKSMKFVDGL 507
+++VSGKL+GQRAKS+KF DG+
Sbjct: 146 QIIVSGKLKGQRAKSVKFQDGV 167
Score = 69.3 bits (162), Expect = 8e-11
Identities = 30/58 (51%), Positives = 39/58 (67%)
Frame = +3
Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKD 683
IHSGD DY+NT V +QGV+GI+V+IMLP+D +G GP P PD I + EP +
Sbjct: 169 IHSGDAVKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITILEPSE 226
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/59 (32%), Positives = 35/59 (59%)
Frame = +2
Query: 68 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 244
+F+ +G+ AEL EF + L +G+S +E+R+ +II+ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQ 79
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 89.0 bits (211), Expect = 1e-16
Identities = 36/83 (43%), Positives = 60/83 (72%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
+QKRF + ++++AE + +GLCA AQ E++ YKL+ + VR A +++ +++ GA+
Sbjct: 86 LQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAK 145
Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
GCE+++SGKL+ QRAK+MKF G
Sbjct: 146 GCEIIISGKLKQQRAKTMKFKQG 168
Score = 79.0 bits (186), Expect = 1e-13
Identities = 35/66 (53%), Positives = 51/66 (77%)
Frame = +2
Query: 53 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 232
I+KK+KFV DGVF AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 233 RIRELT 250
+ +ELT
Sbjct: 78 KHKELT 83
Score = 64.5 bits (150), Expect = 2e-09
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Frame = +3
Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQ--GKNGPKKPQPDHILVTEPK 680
I +G P NDY++ A RHV +QG++G+KVKIMLP++ K G K P PD++++ PK
Sbjct: 171 ICTGQPKNDYIDVAVRHVFFKQGIMGVKVKIMLPYEPNPAKKFGVKTPIPDNVIIHPPK 229
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 82.6 bits (195), Expect = 8e-15
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +3
Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 680
+ SG P +Y+++A RHVLLRQGVLGIKVKIML WD GK GPK P PD++++ PK
Sbjct: 15 VSSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGPKTPLPDNVVIHMPK 71
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 76.2 bits (179), Expect = 7e-13
Identities = 35/41 (85%), Positives = 38/41 (92%)
Frame = +1
Query: 382 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 504
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDG 70
Score = 71.7 bits (168), Expect = 2e-11
Identities = 29/59 (49%), Positives = 43/59 (72%)
Frame = +3
Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 686
I SG+P DY+ + TRH LLRQG +G++VKIML D +G++GP P PD +++ PK++
Sbjct: 73 ISSGNPVRDYIVSCTRHALLRQGTIGMRVKIMLDHDPKGRDGPSTPIPDTVVIHTPKED 131
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 75.8 bits (178), Expect = 1e-12
Identities = 34/80 (42%), Positives = 52/80 (65%)
Frame = +1
Query: 265 RFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCE 444
RF ++ ++ +K+ RGL A ++LR KL + +RRA Y ++R M +GA GCE
Sbjct: 82 RFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRAGAAGCE 141
Query: 445 VVVSGKLRGQRAKSMKFVDG 504
V+V+GKLR QRA++ KF +G
Sbjct: 142 VIVAGKLRAQRARANKFKEG 161
Score = 38.7 bits (86), Expect = 0.13
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +2
Query: 68 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 247
K++ D + +AEL+EF +REL + GY+ + T +II + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Score = 38.3 bits (85), Expect = 0.18
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 611
I +G P ++ ATRH+ +RQGV+G+KV+I P
Sbjct: 164 ISTGHPKRIFLAEATRHIKMRQGVIGVKVRIYNP 197
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 68.9 bits (161), Expect = 1e-10
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = +2
Query: 122 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 247
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIREL 57
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 65.3 bits (152), Expect = 1e-09
Identities = 31/43 (72%), Positives = 36/43 (83%)
Frame = +2
Query: 122 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 250
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELT 448
Score = 42.7 bits (96), Expect = 0.008
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +2
Query: 122 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 217
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 65.3 bits (152), Expect = 1e-09
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = +2
Query: 122 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 250
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELT 181
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +2
Query: 50 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEII 187
+ISK+RKFV GVF A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 64.1 bits (149), Expect = 3e-09
Identities = 35/83 (42%), Positives = 50/83 (60%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
++K+F + +E+ E++ L A QA L L G+ RRA Y LR IM +GAR
Sbjct: 69 LEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGAR 126
Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
G E+ +SGKL G+RAKS++F G
Sbjct: 127 GVEIRLSGKLTGERAKSIRFYQG 149
Score = 58.0 bits (134), Expect = 2e-07
Identities = 26/63 (41%), Positives = 42/63 (66%)
Frame = +2
Query: 62 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 241
+R F+ + V + ++EFL +EL GY G++++ TP+ +++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 242 ELT 250
ELT
Sbjct: 64 ELT 66
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 62.1 bits (144), Expect = 1e-08
Identities = 25/74 (33%), Positives = 48/74 (64%)
Frame = +2
Query: 62 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 241
++KF+ DGV + +FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 242 ELTSEYRSDSTFQS 283
+LT + +D +S
Sbjct: 64 QLTQDLATDYDIES 77
Score = 56.4 bits (130), Expect = 6e-07
Identities = 30/74 (40%), Positives = 43/74 (58%)
Frame = +1
Query: 283 QSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGK 462
+S ++ ++V A AE L L G R+A +R IMESGA GCEV+V+GK
Sbjct: 76 ESPQVEVQQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGK 135
Query: 463 LRGQRAKSMKFVDG 504
L G R+++ KF +G
Sbjct: 136 LTGSRSRTQKFTEG 149
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 58.4 bits (135), Expect = 2e-07
Identities = 24/65 (36%), Positives = 44/65 (67%)
Frame = +2
Query: 62 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 241
++KFV DG KA ++E+ +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 242 ELTSE 256
+LT +
Sbjct: 64 KLTRD 68
Score = 56.0 bits (129), Expect = 8e-07
Identities = 30/74 (40%), Positives = 44/74 (59%)
Frame = +1
Query: 283 QSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGK 462
++ ++ A++V L A A L + G R+A + LR +M +GA GCEVV+SGK
Sbjct: 76 ENPQIDAQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGK 135
Query: 463 LRGQRAKSMKFVDG 504
L G R++ KFVDG
Sbjct: 136 LTGARSRVEKFVDG 149
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 58.0 bits (134), Expect = 2e-07
Identities = 22/68 (32%), Positives = 47/68 (69%)
Frame = +2
Query: 53 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 232
++ +++F+ DG+ + +++EF EL GY G++V TP+ ++I++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 233 RIRELTSE 256
IR++T+E
Sbjct: 61 NIRKITTE 68
Score = 46.8 bits (106), Expect = 5e-04
Identities = 30/83 (36%), Positives = 47/83 (56%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
++ RFN+ + V++ ++V L A A+ L L G R+A + + IMESGA
Sbjct: 69 LEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGAL 126
Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
G E+V+SGK+ G R++ KF G
Sbjct: 127 GAEIVLSGKVTGARSRVEKFNRG 149
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 55.6 bits (128), Expect = 1e-06
Identities = 32/83 (38%), Positives = 50/83 (60%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
VQ+RF + + V + +++ + L A L L G+ RRA YG LR IM +GA+
Sbjct: 76 VQERFPLLGR-VSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAK 134
Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
G +++SGKL G RA++ KF++G
Sbjct: 135 GAMIILSGKLIGARARTEKFMEG 157
Score = 54.4 bits (125), Expect = 3e-06
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +2
Query: 35 IMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 214
+M N+ +KFV G+ K EL+E+L EL GY G+ ++ P ++II R
Sbjct: 2 VMYGENVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIA 61
Query: 215 LGEKGRRIRELTSE 256
+G +GR IR + E
Sbjct: 62 IGRRGRNIRRVEEE 75
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 54.8 bits (126), Expect = 2e-06
Identities = 21/68 (30%), Positives = 45/68 (66%)
Frame = +2
Query: 62 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 241
++ FV +G+ + ++E+L +EL GY G++V+VTP+ + +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 242 ELTSEYRS 265
+T + ++
Sbjct: 63 AITQKLKN 70
Score = 53.6 bits (123), Expect = 4e-06
Identities = 29/84 (34%), Positives = 47/84 (55%)
Frame = +1
Query: 253 RVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA 432
+++ +F++ VE+ ++V L A + L G+ RR Y +R IM +GA
Sbjct: 67 KLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGA 124
Query: 433 RGCEVVVSGKLRGQRAKSMKFVDG 504
+G EV +SGK+RG R+ + KF DG
Sbjct: 125 QGVEVTISGKIRGARSATAKFTDG 148
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 53.2 bits (122), Expect = 6e-06
Identities = 35/83 (42%), Positives = 45/83 (54%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
+++ F IP V + KV L A A L L G RRA Y LR IM +GA
Sbjct: 74 LEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAI 131
Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
G +V VSGKLRG+RA+ K++ G
Sbjct: 132 GAQVKVSGKLRGERARFEKYIAG 154
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/71 (29%), Positives = 46/71 (64%)
Frame = +2
Query: 38 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 217
M+V + K+ F+ + + +++E+L + GYS VE++ TP+ + +II A R+ +++
Sbjct: 1 MSVAKKNIKKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAII 60
Query: 218 GEKGRRIRELT 250
G +G+ I+++T
Sbjct: 61 GRRGQTIKQIT 71
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 52.0 bits (119), Expect = 1e-05
Identities = 24/43 (55%), Positives = 34/43 (79%)
Frame = +2
Query: 122 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 250
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELT 280
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 51.6 bits (118), Expect = 2e-05
Identities = 22/63 (34%), Positives = 39/63 (61%)
Frame = +2
Query: 62 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 241
+R FVG+ V + ++E+ +L GYS ++ + TPI + I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 242 ELT 250
ELT
Sbjct: 63 ELT 65
Score = 48.8 bits (111), Expect = 1e-04
Identities = 19/44 (43%), Positives = 32/44 (72%)
Frame = +1
Query: 373 GLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 504
G+ R+ + +R +M SGA+G ++VSGKL G+R+++ KF+DG
Sbjct: 105 GMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDG 148
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +2
Query: 62 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 241
KR F+ + K +++E+L ++ Y+GVEV TPI + +II A R ++G GR I+
Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64
Query: 242 EL 247
+L
Sbjct: 65 QL 66
Score = 42.3 bits (95), Expect = 0.011
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +1
Query: 325 LCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 504
L A A L L G RRA + +R IM +GA G E+++SGKL +RA+ K +G
Sbjct: 91 LNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEG 150
Query: 505 L 507
+
Sbjct: 151 I 151
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 50.8 bits (116), Expect = 3e-05
Identities = 29/83 (34%), Positives = 45/83 (54%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
+++ F I +++ +V + L A A + L+ G+ RRA L IM +GAR
Sbjct: 70 LEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGAR 127
Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
G E+V+SGKL QR ++ KF G
Sbjct: 128 GAEIVISGKLTSQRHRTEKFTRG 150
Score = 39.5 bits (88), Expect = 0.077
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 65 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 244
RK + G+ LNE+L R+L Y + TPI +++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 245 L 247
+
Sbjct: 66 I 66
Score = 36.7 bits (81), Expect = 0.54
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3
Query: 516 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 611
SG+P + V+ A HVLL+ G+ G+KV+IM P
Sbjct: 155 SGEPGEELVDEAIVHVLLKLGMYGVKVRIMKP 186
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 50.4 bits (115), Expect = 4e-05
Identities = 33/81 (40%), Positives = 43/81 (53%)
Frame = +1
Query: 262 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 441
K F I V + ++V A A L L G RRA Y L IME+GA+GC
Sbjct: 70 KDFGIENPQVSV--DEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIMEAGAKGC 127
Query: 442 EVVVSGKLRGQRAKSMKFVDG 504
E+ +SGKL +RA++ KFV G
Sbjct: 128 EIEISGKLVSERARTEKFVAG 148
Score = 47.6 bits (108), Expect = 3e-04
Identities = 21/67 (31%), Positives = 41/67 (61%)
Frame = +2
Query: 62 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 241
+RKFV + + K + E++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 242 ELTSEYR 262
LT + +
Sbjct: 64 ALTEKLK 70
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 49.2 bits (112), Expect = 1e-04
Identities = 25/62 (40%), Positives = 34/62 (54%)
Frame = +2
Query: 98 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSEYRSDSTF 277
+L EFL + + G+SGVEV P ++I + TR V+G KG IRELT D
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Query: 278 QS 283
+S
Sbjct: 76 KS 77
Score = 39.1 bits (87), Expect = 0.10
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 253 RVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES-G 429
R++K F++ V++ +++ T L + + G A RRA ++ IME
Sbjct: 68 RLEKDFDLKSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKD 125
Query: 430 ARGCEVVVSGKLRGQRAKSMKFVDGL 507
A G ++ +SGKLRG R+ K G+
Sbjct: 126 AMGVQITISGKLRGDRSAFEKHTSGI 151
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 46.8 bits (106), Expect = 5e-04
Identities = 27/85 (31%), Positives = 44/85 (51%)
Frame = +1
Query: 250 FRVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 429
+R++ F + +E+ ++ L A A L L G RRA + + IM++G
Sbjct: 71 YRLKSDFKLENPRLEV--NEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMDAG 128
Query: 430 ARGCEVVVSGKLRGQRAKSMKFVDG 504
ARGC +++SGK+ G R + KF G
Sbjct: 129 ARGCLIILSGKISGPRHRVQKFQQG 153
Score = 43.6 bits (98), Expect = 0.005
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 65 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 244
R F+ V + + E+L RE G+ G+E TP +++ + A + V+G +G+ I E
Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68
Query: 245 LTSEYRSD 268
L +SD
Sbjct: 69 LQYRLKSD 76
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 46.8 bits (106), Expect = 5e-04
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +2
Query: 62 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 241
KR F+ K ++E+L ++ Y+GVE+ TPI + +II A R ++G+ G+ I+
Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64
Query: 242 EL 247
+L
Sbjct: 65 QL 66
Score = 46.0 bits (104), Expect = 9e-04
Identities = 28/60 (46%), Positives = 33/60 (55%)
Frame = +1
Query: 325 LCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 504
L A A L L G RRA + +R IM SGA G EV+VSGKL +RAK K +G
Sbjct: 91 LNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEG 150
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 43.2 bits (97), Expect = 0.006
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +1
Query: 385 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 504
RR +LR +ME+GA G E+++SGKLR +RA+ K G
Sbjct: 113 RRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAG 152
Score = 38.7 bits (86), Expect = 0.13
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 62 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 241
K F+ + K L+EFL + GY+G+E+ TP ++I A ++G G IR
Sbjct: 7 KSYFIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIR 66
Query: 242 EL 247
+L
Sbjct: 67 KL 68
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 42.7 bits (96), Expect = 0.008
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 274 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 453
I ++ V++ ++ L A AE++ +L G +A RRA + M GA G ++ V
Sbjct: 93 ITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQV 152
Query: 454 SGKLRG-QRAKSMKFVDGLRSTLETL 528
SG+L G + A+S F +G R+ L TL
Sbjct: 153 SGRLNGAEMARSEMFKEG-RTPLHTL 177
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 41.9 bits (94), Expect = 0.014
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Frame = +1
Query: 187 YYGHQDTECARRERTQNP*AHFR--VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 360
++ HQ C+ ++ +N + + F I +++ + + + + Q+ ++
Sbjct: 89 FHYHQKLHCSFTKKLKNKLTLTKNIISHLFFINSNKLKILYKNYKSSNISTMTQSSRMKE 148
Query: 361 KL-IGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLRS 513
+ R + LRF++ SG RGC + + G R +R K+ KF GL S
Sbjct: 149 AFNYTNKSFRSIIFNTLRFLINSGVRGCMIKLKGVYRSKRTKTFKFRRGLIS 200
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 41.9 bits (94), Expect = 0.014
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 379 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG-LRST 516
A RR L IM +GA G E+V++G+L GQR K+ +F G LR T
Sbjct: 108 AYRRLAQRYLETIMNAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKT 154
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 41.5 bits (93), Expect = 0.019
Identities = 16/64 (25%), Positives = 37/64 (57%)
Frame = +2
Query: 59 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 238
K+RKF+ + V + + E++ +E G+ + ++ TP + I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 239 RELT 250
+++T
Sbjct: 62 QQMT 65
Score = 38.7 bits (86), Expect = 0.13
Identities = 23/83 (27%), Positives = 44/83 (53%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
++K++ I +E+ + V L A+ + L G + R+A L +++GA+
Sbjct: 68 LEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTIQAGAK 125
Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
G + +SGK+ G+RA+ KF+ G
Sbjct: 126 GVLIKISGKISGERARYQKFIYG 148
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 41.5 bits (93), Expect = 0.019
Identities = 19/63 (30%), Positives = 36/63 (57%)
Frame = +2
Query: 65 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 244
+K + + K + EFL L++ GY E+ TP+ + I+I A R ++G KG ++E
Sbjct: 12 KKILEENKKKWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKE 71
Query: 245 LTS 253
+++
Sbjct: 72 ISN 74
Score = 41.5 bits (93), Expect = 0.019
Identities = 19/40 (47%), Positives = 28/40 (70%)
Frame = +1
Query: 373 GLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 492
G+ RR + +R +ME+GA+G E+VVSGKL +RA+ K
Sbjct: 116 GVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEK 155
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 40.3 bits (90), Expect = 0.044
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 373 GLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG--LRSTLETLAMITST 546
G+ RRA LR + E+ +G EV++SGKL +R++ K+ G +++ + L +
Sbjct: 104 GIRFRRAAIIALRQLQEANVQGAEVIISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEA 163
Query: 547 LLP 555
++P
Sbjct: 164 VIP 166
Score = 33.9 bits (74), Expect = 3.8
Identities = 15/67 (22%), Positives = 35/67 (52%)
Frame = +2
Query: 65 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 244
++ + D K + E+L L + Y ++ T + + I+I+A + ++G KG++++
Sbjct: 3 KRIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKA 62
Query: 245 LTSEYRS 265
L +S
Sbjct: 63 LADILKS 69
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 39.9 bits (89), Expect = 0.058
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +1
Query: 379 AVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLRSTLETL 528
A RRA + +MESGARG +V++SG+L G ++A++ K ++G R L TL
Sbjct: 130 AFRRAMKQAAQRVMESGARGVKVILSGRLGGAEQARTEKVLEG-RVPLHTL 179
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 37.9 bits (84), Expect = 0.24
Identities = 27/84 (32%), Positives = 38/84 (45%)
Frame = +1
Query: 277 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 456
P V L V + AI AE L +L +A RRA VL I +G ++ VS
Sbjct: 111 PTAKVALQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQRDRVQGAKIQVS 170
Query: 457 GKLRGQRAKSMKFVDGLRSTLETL 528
G+L G +++ R L+TL
Sbjct: 171 GRLNGAEIARSEWIRTGRVPLQTL 194
>UniRef50_Q2UIN9 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 258
Score = 36.7 bits (81), Expect = 0.54
Identities = 25/84 (29%), Positives = 35/84 (41%)
Frame = +2
Query: 431 PVVVKLLYLASCVVNVPNQ*SL*MDSDPLWRPLQ*LRQHCYQTCASQTRSTRNQGQNHVA 610
P VV++ + V NV D P W+ LQ LR+ Q + S+ Q A
Sbjct: 145 PHVVRVWNIVDLVFNVTENDPTRPDPGPTWKVLQHLREKAAQRRGNVAMSSPTQ-----A 199
Query: 611 VGPARQERPEEATTRPHPGNRAQG 682
GP+ + PE T H G +G
Sbjct: 200 HGPSDERVPESRTAEQHSGQELEG 223
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 36.7 bits (81), Expect = 0.54
Identities = 25/91 (27%), Positives = 46/91 (50%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
VQKR N + V++ +++ L A A+++ +L ++ R+ M+SGA+
Sbjct: 93 VQKRLN---KKVQIKVKEIKRMELNAYLVAQNVARQLTARVSFRKCLRQACAGTMKSGAQ 149
Query: 436 GCEVVVSGKLRGQRAKSMKFVDGLRSTLETL 528
G ++ VSG+L G + + R+ L TL
Sbjct: 150 GVKIRVSGRLGGAEMSRTEEIKEGRTPLHTL 180
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 36.3 bits (80), Expect = 0.72
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
+QK E + + + L AI AE + KL R A +R M+SGA+
Sbjct: 92 IQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAIKLENRAPFRVAQKFAIRNAMKSGAK 151
Query: 436 GCEVVVSGKLRG-QRAKSMKFVDG 504
G + VSG+L G A+S + +G
Sbjct: 152 GIKTQVSGRLNGVDMARSEGYSEG 175
>UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC
precursor - Enterococcus faecalis (Streptococcus
faecalis)
Length = 545
Score = 35.5 bits (78), Expect = 1.3
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 71 FVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIII 190
FVGDG F+ + EFL +L E+ G++V +TP+ + + +
Sbjct: 397 FVGDGEFEKKAGEFLQGQL-EENLEGLKVNITPVPANVFM 435
>UniRef50_A0P432 Cluster: Putative uncharacterized protein; n=2;
Rhodobacteraceae|Rep: Putative uncharacterized protein -
Stappia aggregata IAM 12614
Length = 460
Score = 35.5 bits (78), Expect = 1.3
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 337 AQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLRST 516
A AESL L A++R G+ F + + R C+V++ G + ++ +D L +
Sbjct: 87 ADAESLLRSLTAARAIQRTGDGLTDFHLTAFGRSCQVIIGGDCLDKGPSNLDLLDSLSAL 146
Query: 517 LET 525
L+T
Sbjct: 147 LKT 149
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 2.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 339 PGRISKIQAYRRSRCTSCLLWCSPFHH 419
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_UPI0000F1F8B1 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 499
Score = 33.9 bits (74), Expect = 3.8
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 63 SENLLEMGFSRQNSMS--SSLGSWPRTATPAW-KCGSLPSARRSLLWPPGHRVCSERKDA 233
S ++ SR NS+ SS R + W +C L RR+LLW PG VC ++
Sbjct: 218 SVQFMDYKASRSNSVETHSSERRLQRNPSSEWCECEDLLLRRRALLWRPGGSVCVREDES 277
Query: 234 ESVSSLPSTEAIQHSRA 284
SS + H ++
Sbjct: 278 SPDSSRSQNSSPVHRKS 294
>UniRef50_A3LYD9 Cluster: Hypothetical transcription factor; n=1;
Pichia stipitis|Rep: Hypothetical transcription factor -
Pichia stipitis (Yeast)
Length = 756
Score = 33.9 bits (74), Expect = 3.8
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -1
Query: 268 IASVLGSELTDSASFLSEHTLCPGGHNNDLRADGSDPHFHAGVAVLGQLPSEE 110
+ S++GS T +++ LS HT P +NN + ++G D F A+L P +
Sbjct: 282 VFSLIGSSTTLNSTMLSSHT-TPRDNNNSIFSNGLDESFSPSNAILNSSPKRK 333
>UniRef50_UPI0000E23955 Cluster: PREDICTED: similar to heat shock
protein 2; n=1; Pan troglodytes|Rep: PREDICTED: similar
to heat shock protein 2 - Pan troglodytes
Length = 640
Score = 33.5 bits (73), Expect = 5.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 592 RSKSCCRGTSKARTARRSHNQTTSW*QSPR 681
RS+SCCR +S AR+ R+ T W +PR
Sbjct: 348 RSRSCCRISSTARSXTRASTPTRRWPMAPR 377
>UniRef50_UPI00005A065A Cluster: PREDICTED: similar to
interferon-induced protein with tetratricopeptide
repeats 1-like; n=4; Eutheria|Rep: PREDICTED: similar to
interferon-induced protein with tetratricopeptide
repeats 1-like - Canis familiaris
Length = 464
Score = 33.5 bits (73), Expect = 5.1
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +3
Query: 210 VCSERKDAESVSSLPSTE-AIQHSRAI---CRIVC*KGGYSWPLRYRPGRISKIQAYRRS 377
+C ++ E++ SL E IQ I R + G Y+W L Y GR+++ QAY
Sbjct: 52 LCEISENQEALESLKEAEDLIQQEHDIQSDVRSLVTWGNYAW-LYYHMGRLAEAQAYLDK 110
Query: 378 RCTSCLLWCSPFHHGIWCP 434
+C+ + +P + + CP
Sbjct: 111 VENTCMKFAAPSCYRMECP 129
>UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613;
n=1; Homo sapiens|Rep: CDNA FLJ45717 fis, clone
FELNG2001613 - Homo sapiens (Human)
Length = 237
Score = 33.5 bits (73), Expect = 5.1
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +2
Query: 560 CASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAP 697
CAS RS R Q Q P P A RP PG+ AP
Sbjct: 114 CASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAP 159
>UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=1;
Arabidopsis thaliana|Rep: Uncharacterized protein
At3g06190.2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 295
Score = 33.1 bits (72), Expect = 6.7
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 250 SELTDSASFLSEHTLCPGGHNNDLRADGSD 161
SEL + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus
carota|Rep: Glycine-rich protein - Daucus carota
(Carrot)
Length = 111
Score = 33.1 bits (72), Expect = 6.7
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +3
Query: 399 WCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCRW 503
W P G WC W C IW S C+ RW
Sbjct: 32 WWIPPRRGRWCWWRCRCWIWSRLRSWCRSRRRIRW 66
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 32.7 bits (71), Expect = 8.8
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 283 QSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGK 462
+SV L +V + A AE++ +L + RRA + M GARG + VSG+
Sbjct: 97 KSVALNIVEVKNPDMDAQLIAENIAQQLEKRIGFRRAMKNAMGRAMRMGARGIKTQVSGR 156
Query: 463 LRG-QRAKSMKFVDG 504
L G + A++ + DG
Sbjct: 157 LGGAEIARTEHYHDG 171
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 32.7 bits (71), Expect = 8.8
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 274 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 453
+ ++ +++ ++ L A AE + +L ++ RRA + M GA G +++
Sbjct: 93 LTKKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMT 152
Query: 454 SGKLRG-QRAKSMKFVDG 504
SG+L G + A+S ++ +G
Sbjct: 153 SGRLGGAEMARSEQYKEG 170
>UniRef50_Q9VWU0 Cluster: CG15046-PA; n=2; Sophophora|Rep:
CG15046-PA - Drosophila melanogaster (Fruit fly)
Length = 494
Score = 32.7 bits (71), Expect = 8.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 48 TIFQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPS 173
T QRS +L+ +G+ + L P P W CG LP+
Sbjct: 364 TRLQRSGSLVAVGWGKGEDTDCPLFEMPMRLRPTWACGDLPN 405
>UniRef50_Q4Q691 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 668
Score = 32.7 bits (71), Expect = 8.8
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +3
Query: 129 PRTATPAWKCGSLPSARRSLLWPPGHRVCSERKDAESVSSLPSTEA 266
PRT +PA CG+ S R +L PG + R A SSLPS+ A
Sbjct: 115 PRTPSPALSCGTSRSPR--VLISPGVDERASRTRANCTSSLPSSSA 158
>UniRef50_Q4FYZ9 Cluster: Putative uncharacterized protein; n=1;
Leishmania major|Rep: Putative uncharacterized protein -
Leishmania major
Length = 3155
Score = 32.7 bits (71), Expect = 8.8
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = +3
Query: 27 PLQSWP*TIFQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSARRSLLWPPGH 206
PL + P T+ Q + + G S Q++ S+S+ A P S P A + L+P H
Sbjct: 1080 PLYTLPSTLLQLQQQPPQHGSSPQSAPSASVDG----AAPPSSYASPPVATVTHLFPSQH 1135
Query: 207 RVCSERKDAESVSSLPSTEAIQHS 278
+ ++ A + +S P T QHS
Sbjct: 1136 QPLAQGCTASASASAPLTALPQHS 1159
>UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8;
Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 264
Score = 32.7 bits (71), Expect = 8.8
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 394 CYGVLRFI-MESGARGCEVVVSGKLRGQRAKSMK 492
C +L I M ARGC V++GKL+G++A S K
Sbjct: 222 CLDILNIIWMYKIARGCYKVITGKLKGRKADSKK 255
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 32.7 bits (71), Expect = 8.8
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +1
Query: 271 NIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 450
N+ + + L E+V L A AE + +L + RR +L M++GA+G ++
Sbjct: 98 NLVGRRINLKVEEVGRPELQAQLVAEDISQQLAKRSSFRRTMKRMLEQTMDAGAKGIKIQ 157
Query: 451 VSGKLRG 471
++G+L G
Sbjct: 158 MAGRLGG 164
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 32.7 bits (71), Expect = 8.8
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 376 LAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 504
+A RRA G ++ + +GA+G +VSG+L G A+ ++ +G
Sbjct: 135 VAFRRAMRGAIQRVQRAGAKGVRTMVSGRLNGADIARKEQYTEG 178
>UniRef50_O94373 Cluster: ATP synthase subunit 4, mitochondrial
precursor; n=1; Schizosaccharomyces pombe|Rep: ATP
synthase subunit 4, mitochondrial precursor -
Schizosaccharomyces pombe (Fission yeast)
Length = 244
Score = 32.7 bits (71), Expect = 8.8
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +3
Query: 117 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLPSTEAIQHS 278
L S+P AW+ LPS R+ L P P R+ ++K A +SS+PST + S
Sbjct: 8 LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVPSTSLLTKS 67
>UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas
palustris|Rep: PsbAa - Rhodopseudomonas palustris
Length = 403
Score = 29.1 bits (62), Expect(2) = 9.8
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 277 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA--RGCEVV 450
P + L KVA L I A +LR +LI G V GV+ + + A RGCEV
Sbjct: 114 PRRLAALEGTKVAVHYLRGIDDALTLRPQLIEGHRVALVGGGVIGLEVAAAALSRGCEVT 173
Query: 451 V 453
+
Sbjct: 174 I 174
Score = 22.2 bits (45), Expect(2) = 9.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1
Query: 433 RGCEVVVSGKLRGQRAKSMKFVDG 504
RG ++ +L GQ+ S+ DG
Sbjct: 201 RGAAILCKAELSGQQTHSLTLADG 224
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 753,688,914
Number of Sequences: 1657284
Number of extensions: 16075680
Number of successful extensions: 51207
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 48548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51162
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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