Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30531
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 136 2e-33
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 33 0.052
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 28 1.1
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 27 1.9
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 27 1.9
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 27 1.9
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 3.4
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 7.8
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 136 bits (330), Expect = 2e-33
Identities = 63/83 (75%), Positives = 71/83 (85%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
VQKRF E +VELYAEKV RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+
Sbjct: 75 VQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAK 134
Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
GCEVV+SGKLR RAKSMKF DG
Sbjct: 135 GCEVVISGKLRAARAKSMKFADG 157
Score = 115 bits (277), Expect = 6e-27
Identities = 59/82 (71%), Positives = 63/82 (76%)
Frame = +2
Query: 41 AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 220
A ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3 AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62
Query: 221 EKGRRIRELTSEYRSDSTFQSN 286
EKGRRIRELT+ + F N
Sbjct: 63 EKGRRIRELTALVQKRFKFAEN 84
Score = 73.7 bits (173), Expect = 2e-14
Identities = 35/59 (59%), Positives = 45/59 (76%)
Frame = +3
Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 686
IHSG P D++++ATRHVLLRQGVLG+KVKIMLP + K KK PD ++V +PK+E
Sbjct: 160 IHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEE 215
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 32.7 bits (71), Expect = 0.052
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +3
Query: 117 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLPSTEAIQHS 278
L S+P AW+ LPS R+ L P P R+ ++K A +SS+PST + S
Sbjct: 8 LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVPSTSLLTKS 67
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 483 INEVCRWTQIHSGDPCNDYVNTATRHVL 566
+NE+CR+ I +GDP + RH L
Sbjct: 218 LNELCRFIDIFAGDPPESVIRWYCRHQL 245
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 309 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 413
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 309 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 413
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 309 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 413
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 306 FSIQFYRLLWNVESLLYSEVSSRILRPFSPST 211
F ++++ + W+V S S V+S ++ + PST
Sbjct: 159 FLVEWFNIFWDVFSARVSRVNSTPIQLYDPST 190
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 7.8
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Frame = -2
Query: 510 SESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKLVS*RFGLG-- 337
+ S+Y + T+ LA+YN E I+ST S V R LG
Sbjct: 294 ANSVYSTMAYAEATSNLAKYNTIAFGNCLDEKFEEEIISSTARSFFLGDEVKKRLLLGAY 353
Query: 336 DSAKATSSHLFS 301
A+ SS LFS
Sbjct: 354 SLARMNSSDLFS 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,587
Number of Sequences: 5004
Number of extensions: 64525
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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