Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30531
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 153 1e-37
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 32 0.50
02_05_0237 + 27095817-27097433 30 2.0
03_05_1034 + 29870693-29870738,29870849-29871036 29 2.7
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 3.5
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 29 3.5
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 29 3.5
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 4.7
05_01_0563 + 4914032-4914151,4914322-4914402,4915097-4915181,491... 29 4.7
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 4.7
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464... 28 6.2
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 28 6.2
08_01_0346 - 3063440-3064189 28 8.1
06_01_0425 - 3045557-3046004,3046852-3046856 28 8.1
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 28 8.1
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 28 8.1
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 153 bits (372), Expect = 1e-37
Identities = 72/83 (86%), Positives = 76/83 (91%)
Frame = +1
Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
VQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+
Sbjct: 75 VQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAK 134
Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
GCEV+VSGKLR QRAKSMKF DG
Sbjct: 135 GCEVIVSGKLRAQRAKSMKFKDG 157
Score = 123 bits (296), Expect = 2e-28
Identities = 62/78 (79%), Positives = 66/78 (84%)
Frame = +2
Query: 53 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 232
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 233 RIRELTSEYRSDSTFQSN 286
RIRELTS + F N
Sbjct: 67 RIRELTSVVQKRFNFPEN 84
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/59 (64%), Positives = 44/59 (74%)
Frame = +3
Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 686
I SG P N Y+++A RHVLLRQGVLGIKVKIML WD +GK GP P PD + + PKDE
Sbjct: 160 ISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDE 218
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 563 ASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARA 694
A +T S R G++ + P R+E + T RP PG+ + A A
Sbjct: 455 AERTMSLRGGGESAGSDSPCRREEAKSRTPRPQPGSAGERSAAA 498
>02_05_0237 + 27095817-27097433
Length = 538
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 688 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPS 581
G+ L +V R GCG+FG + W G + L+PS
Sbjct: 152 GAHLPAVIRALVGCGWFG--IESWIGGRAVFLLLPS 185
>03_05_1034 + 29870693-29870738,29870849-29871036
Length = 77
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 240 VSSLPSTEAIQHSRAICRIVC*KGGY 317
+S L E I+H+ A+C + C KG Y
Sbjct: 14 ISGLVMLERIEHTEAVCTLFCAKGTY 39
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 493 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 389
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 626 QERPEEATTRPHPGNRAQGRARAP 697
Q R + +T RP PG R++GR+R P
Sbjct: 194 QLRSDYSTHRPPPGGRSRGRSRHP 217
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +3
Query: 531 NDYVNTATRHVLLR----QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 680
++ +N H+ +R QGVL +++ + +Q +NGP+K + L+TE K
Sbjct: 359 SERINGIVNHLRIRGNPVQGVLQLEILRQIALPKQSQNGPRKSRLTISLMTEHK 412
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 114 SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 218
++ SWPR P W C S RR L P R C+
Sbjct: 10 AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45
>05_01_0563 +
4914032-4914151,4914322-4914402,4915097-4915181,
4915595-4915662,4915904-4916005,4916300-4916389,
4916632-4916706,4916782-4916814,4917293-4917367,
4917954-4918004,4918247-4918327
Length = 286
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +1
Query: 391 ACYGVL---RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLRSTLET 525
+C GV+ +FI ++G + E + K+ G+R S + GL+ +ET
Sbjct: 221 SCAGVMYLCQFIEQNGGKLPERLEGSKMAGKRFGSQNLIQGLQLAIET 268
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -1
Query: 178 RADGSDPHFHAGVAVLGQLPSEELIEFCLENPIS 77
R DG +PH A + G ++ CL P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801
>08_02_0502 +
17844775-17845092,17845528-17845634,17846039-17846492,
17846623-17846694,17846804-17846925,17847079-17847294,
17847392-17847500,17847618-17847730,17847916-17848063,
17848274-17848396
Length = 593
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -1
Query: 175 ADGSDPHFHAGVAVLGQLPSEELIEFCLENPISNKFSLL*N---IVHGHDCNGSREKKK 8
ADG PH HA A G++ E + ++ P+ +F+L + VH G+ EK +
Sbjct: 56 ADGERPHGHAAEAGTGRMNLNEYM-VAVDRPLGVRFALAVDGRVFVHSLKKGGNAEKSR 113
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 563 ASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAP 697
A + R+TRN G A + RP + T + G A AP
Sbjct: 1161 AEERRATRNAGGGAAPNKAAPKRRPRKTATNTQAAESSDGNAAAP 1205
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 343 AESLRYKLIGGLAVRRACYGVLR 411
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>06_01_0425 - 3045557-3046004,3046852-3046856
Length = 150
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +3
Query: 204 HRVCSERKDAESVSSLPSTEAIQHSRAICRIVC*KGGYSWPLRYRPGRISKIQAYRRSRC 383
+++ ++ +A+ V S + + ++A C+ GG P R+RPG ++ + + +
Sbjct: 14 NKLDTDPHEADGVQVRDSRKQLA-TKATCKSAPATGGVKKPHRFRPGTVALREIRKYQKS 72
Query: 384 TSCLLWCSPF 413
T L+ PF
Sbjct: 73 TELLIRKLPF 82
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 673 SVTRMWSGCGFFGPFLPCWSH 611
S T M S CGF G CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 262 SVLGSELTDSASFLSEHTLCPGGHNNDLRADGS-DPHFHAGVAVLGQLPSEELIEF 98
S LG ++T S T P D ADGS DP F V+ + P ELI+F
Sbjct: 69 SKLGIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYPFAELIQF 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,893,453
Number of Sequences: 37544
Number of extensions: 470559
Number of successful extensions: 1527
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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