Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30531
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)             151   3e-37
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...   147   5e-36
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)             147   5e-36
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila...    33   0.18 
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila...    33   0.18 
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai...    29   3.9  
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot...    29   3.9  
At2g04810.1 68415.m00494 F-box family protein contains F-box dom...    29   3.9  
At4g29440.1 68417.m04203 expressed protein  contains Pfam profil...    28   6.8  
At2g25150.1 68415.m03008 transferase family protein similar to 1...    28   6.8  
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU...    28   6.8  
At5g62620.1 68418.m07859 galactosyltransferase family protein co...    27   9.0  
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ...    27   9.0  

>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score =  151 bits (367), Expect = 3e-37
 Identities = 71/83 (85%), Positives = 76/83 (91%)
 Frame = +1

Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
           VQKRF  P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+
Sbjct: 73  VQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAK 132

Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
           GCEV+VSGKLR  RAKSMKF DG
Sbjct: 133 GCEVIVSGKLRAARAKSMKFKDG 155



 Score =  121 bits (291), Expect = 5e-28
 Identities = 60/67 (89%), Positives = 63/67 (94%)
 Frame = +2

Query: 53  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 232
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 233 RIRELTS 253
           RIRELTS
Sbjct: 65  RIRELTS 71



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEP 689
           + SG P  +Y++ A RHVLLRQGVLG+KVKIML WD +GK GP  P PD +++  PK++ 
Sbjct: 158 VSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDD 217

Query: 690 V 692
           V
Sbjct: 218 V 218


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score =  147 bits (357), Expect = 5e-36
 Identities = 70/83 (84%), Positives = 74/83 (89%)
 Frame = +1

Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
           VQKRF  P  SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+
Sbjct: 73  VQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAK 132

Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
           GCEV+VSGKLR  RAKSMKF DG
Sbjct: 133 GCEVIVSGKLRAARAKSMKFKDG 155



 Score =  121 bits (291), Expect = 5e-28
 Identities = 60/67 (89%), Positives = 63/67 (94%)
 Frame = +2

Query: 53  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 232
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 233 RIRELTS 253
           RIRELTS
Sbjct: 65  RIRELTS 71



 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 34/59 (57%), Positives = 46/59 (77%)
 Frame = +3

Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 686
           + SG P  +Y+++A RHVLLRQGVLGIKVK+ML WD +G +GPK P PD +++  PK+E
Sbjct: 158 VSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEE 216


>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score =  147 bits (357), Expect = 5e-36
 Identities = 70/83 (84%), Positives = 74/83 (89%)
 Frame = +1

Query: 256 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 435
           VQKRF  P  SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+
Sbjct: 73  VQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAK 132

Query: 436 GCEVVVSGKLRGQRAKSMKFVDG 504
           GCEV+VSGKLR  RAKSMKF DG
Sbjct: 133 GCEVIVSGKLRAARAKSMKFKDG 155



 Score =  121 bits (291), Expect = 5e-28
 Identities = 60/67 (89%), Positives = 63/67 (94%)
 Frame = +2

Query: 53  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 232
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 233 RIRELTS 253
           RIRELTS
Sbjct: 65  RIRELTS 71



 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 37/61 (60%), Positives = 46/61 (75%)
 Frame = +3

Query: 510 IHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEP 689
           + SG P  +Y++ A RHVLLRQGVLGIKVKIML WD  GK+GPK P PD +++  PKD+ 
Sbjct: 158 VSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDV 217

Query: 690 V 692
           V
Sbjct: 218 V 218


>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 295

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 250 SELTDSASFLSEHTLCPGGHNNDLRADGSD 161
           SEL +  + LSEH+L   GH  +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284


>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 406

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 250 SELTDSASFLSEHTLCPGGHNNDLRADGSD 161
           SEL +  + LSEH+L   GH  +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395


>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 442

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 250 SELTDSASFLSEHTLCPGGHNNDLRADGSD 161
           +EL    + LSEH++   GH  ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431


>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
           contains Pfam PF05577: Serine carboxypeptidase S28
          Length = 493

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 54  FQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSA 176
           F RS N+    F    S S +L +W R   P   CGSL S+
Sbjct: 161 FNRSSNVENPWFFFGVSYSGALSAWFRLKFPHLTCGSLASS 201


>At2g04810.1 68415.m00494 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 397

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 447 CCIWQAAWSTCQINEVCRWTQIHSGD 524
           C  W + W TC    +C    IH GD
Sbjct: 50  CSNWYSVWKTCVKRPLCPLRIIHQGD 75


>At4g29440.1 68417.m04203 expressed protein  contains Pfam profile:
            PF03398 eukaryotic protein of unknown function, DUF292
          Length = 1090

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +3

Query: 90   SRQNSMSSSLGSWPRTATPAWKCGSLPSARRSLLWPPGHRVCSERKDAESVSSLPSTEAI 269
            ++Q   +SSL   P+T   +    S P      L P       ++  A S SSLP TE I
Sbjct: 967  AKQRGSASSLSFLPKTDKASPDQDSPPK-----LLPKEKPAAKQQGSATSSSSLPKTEKI 1021

Query: 270  QHSR 281
             H R
Sbjct: 1022 SHYR 1025


>At2g25150.1 68415.m03008 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase
           [gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
           III-2-O-benzoyl transferase [gi:11559716] from Taxus
           cuspidata; contains Pfam transferase family domain
           PF00248; contains EST gb:R65039
          Length = 461

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 181 LRADGSDPHFHAGVAVLGQLPSEELIEF 98
           L+   SDP    GV V+ +LP + ++EF
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEF 445


>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
           Identical to phosphoribosylamine--glycine ligase,
           chloroplast [precursor] SP:P52420 from [Arabidopsis
           thaliana]
          Length = 532

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 427 GARGCEVVVSGKLRGQRAKSMKFVDG 504
           G+ GC+VVV   L G+ A     VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298


>At5g62620.1 68418.m07859 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 681

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 21  RLPLQSWP*TIFQRSENLLE-MGFSRQNSMSSSLGSWPRTATPAWKCGSLPSARRS-LLW 194
           R P +     ++Q S++     G  R+  + SSL   P T  P+ K GS+   + + + W
Sbjct: 77  RAPTRPLKSLLYQESQSESPAQGLRRRTRILSSLRFDPETFNPSSKDGSVELHKSAKVAW 136

Query: 195 PPGHRVCSERKDAESVSSL 251
             G ++  E +  +++ +L
Sbjct: 137 EVGRKIWEELESGKTLKAL 155


>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 781

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +2

Query: 59  KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 235
           K RK  G  + KA + E+  ++    GYSG      P+  + ++     +S+ G+K ++
Sbjct: 349 KTRKLTGIRLQKASM-EYGKKKTTRSGYSGHGKSTNPLAMDDLMFVKDPRSLSGKKNKK 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,441,405
Number of Sequences: 28952
Number of extensions: 360756
Number of successful extensions: 1062
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)