Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30529X
(354 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 33 0.013
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 31 0.039
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 0.37
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 2.0
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 26 2.0
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 26 2.0
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 25 2.6
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 25 2.6
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 3.4
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 6.0
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 24 6.0
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 24 6.0
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||... 24 7.9
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 24 7.9
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 24 7.9
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 33.1 bits (72), Expect = 0.013
Identities = 20/68 (29%), Positives = 40/68 (58%)
Frame = +3
Query: 138 AEDFYSPRTGIQIGAVLEYLVQRVQGMMSVKKPQEKIEGIILN*LRMCLHRSRMLLRMKW 317
A+ + +GI +GAV YL++R+ + VK + +E I+N + + ++M +R+K
Sbjct: 2 AKKYQDLASGIAMGAVFMYLLRRLYESLRVKSSADSLEEDIVNGVEGLIGNTKM-VRIK- 59
Query: 318 TVSQSPRC 341
++SQ+ C
Sbjct: 60 SLSQATGC 67
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 31.5 bits (68), Expect = 0.039
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 182 GIGIFGATRTRNDVG*EASGED*GNHSELIENVSTSIPNAAENEVD 319
GI +N + SG+ N+S LIEN STS N A+N +D
Sbjct: 536 GINESNMPMLQNGLPLRTSGDHPSNYSNLIENSSTSDTNNADNGMD 581
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 0.37
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 252 PQSSPEAS*PTSFLVRVAPNIPIPPQSGYPSVASK 148
P S+P P S L PN+P+P S PSVA +
Sbjct: 1472 PSSAPAPPAPVSQLPPAVPNVPVP--SMIPSVAQQ 1504
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.8 bits (54), Expect = 2.0
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +3
Query: 273 RMCLHRSRMLLRMKWTVSQSPR 338
R+ ++SR++L+ W+V+ PR
Sbjct: 162 RLTTYKSRLVLKFSWSVNGGPR 183
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 2.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 97 PSISTCLSCGHDRTPKIFTRHGRVSRL 177
P L+CG DRT +I+ G+V+ L
Sbjct: 227 PYFPLLLTCGFDRTLRIYQLDGKVNPL 253
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 2.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 197 QIFQYRPNLDTRPWRVKIFG---VLSWPQDKHVEIEGFLD 87
+I RPN D P + +FG +L WP D E EG L+
Sbjct: 148 RIVLVRPNSDACPV-LDVFGYRVLLGWPSDSEDEWEGNLN 186
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 337 LGLWDTVHFILSSIRDRCRHILN 269
L LWD ++ I+S+ D R ILN
Sbjct: 383 LALWDRLNTIISTTMDADRSILN 405
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 252 PQSSPEAS*PTSFLVRVAPNIPIPPQSGYPSVAS 151
P SSP+ + +S ++ +AP+ P+ S PS S
Sbjct: 218 PSSSPQTTQDSSPILTMAPSTPVSVGSTPPSTPS 251
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = +1
Query: 82 GPSRKPSISTCLSC---GHDRTPKIFTRHGR 165
G RKP+ C +C GH +T KI GR
Sbjct: 937 GEGRKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 24.2 bits (50), Expect = 6.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 213 LVRVAPNIPIPPQSGYPSVASKN 145
L +V P IP+PP + P + N
Sbjct: 80 LAKVRPEIPLPPAAPIPMKKASN 102
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 24.2 bits (50), Expect = 6.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 145 SSASCRGRRTNMLKLRVFLT 86
SS CR TN+L+ RV LT
Sbjct: 538 SSVKCRVLSTNVLRKRVLLT 557
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 24.2 bits (50), Expect = 6.0
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 264 SE*FPQSSPEAS*PTSFLVRVAPNI-PIPP 178
SE PQ P S P+S + V PNI P PP
Sbjct: 368 SEDPPQLPPSPSSPSSPALSVKPNIDPQPP 397
>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
3|||Manual
Length = 264
Score = 23.8 bits (49), Expect = 7.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 255 FPQSSPEAS*PTSFLVRVAPNIPIPPQSGYPSVASKNLRRPVVAAGQ 115
FP+ +PE S + LV N PQS + V RR ++ + Q
Sbjct: 202 FPKFNPENSVTSLDLVEPPENYSWAPQSDWTFVPPNEFRRFILWSPQ 248
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 23.8 bits (49), Expect = 7.9
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +2
Query: 122 AATTGRRRFLLATDGYPDWGGIGIFGATRTRNDVG*EASGED*GNHSELIENVSTSIPNA 301
A T G F A P G G+FG+T+T N +G G+++ N S+ N
Sbjct: 520 ANTAGSNMFGSANSSTP---GTGLFGSTQTNNATSNTGTGLF-GSNNANTTNTGGSLFNK 575
Query: 302 AENEVDGV 325
G+
Sbjct: 576 PSTTTGGL 583
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 23.8 bits (49), Expect = 7.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 321 PSTSFSAAFGIDVDTFSINSE*FPQSSPEAS*PTSFL 211
P+T FS+A + + ++ + P SSPE S + F+
Sbjct: 204 PNTGFSSARKRSLRSSNLKKKFVPLSSPEESNESEFI 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,552,564
Number of Sequences: 5004
Number of extensions: 31017
Number of successful extensions: 97
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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