Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30529X
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0113 + 20938357-20938730,20938820-20939057,20939140-209392... 32 0.11
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978... 28 2.4
07_03_0708 - 20865786-20867153 27 3.2
07_03_0363 + 17225472-17226778,17226910-17226917,17227313-172274... 27 3.2
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 27 3.2
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022... 27 3.2
11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378... 27 4.2
11_01_0324 - 2428035-2428514 27 4.2
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366... 27 4.2
03_06_0146 - 31976538-31978643,31978653-31978751 27 4.2
12_01_0974 - 9808192-9808455,9809023-9809172,9810892-9811488 27 5.6
06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791 27 5.6
12_02_0781 + 23105554-23106855,23107191-23107511,23107581-231076... 26 7.4
10_08_1022 + 22337332-22339398 26 7.4
08_01_0686 + 6049563-6050900 26 7.4
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802... 26 9.8
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 26 9.8
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 26 9.8
03_06_0195 + 32256771-32258792 26 9.8
>09_06_0113 +
20938357-20938730,20938820-20939057,20939140-20939264,
20939682-20939715,20939804-20939850,20939948-20940079,
20940420-20940484,20940613-20940685,20940790-20940946
Length = 414
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 2 PGTRRHSHVSRLVSIGRYSLPQPGXGQARQENPQFQHVCPAATT 133
P T R S R S S+P+PG + Q+N + + CP T
Sbjct: 353 PQTSRFSSNKRSTSCSTKSMPKPGLQKQEQDNKKMKMTCPPKKT 396
>12_01_0971 -
9781887-9781924,9782036-9782247,9782327-9784114,
9784630-9785432
Length = 946
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 123 RPRQDAEDFYSPRTGIQIGAVLEYLVQRVQGMMSVKKPQEKI 248
R R +DF S + ++I L L + V+ ++ + P+EKI
Sbjct: 135 RKRNQIDDFISEPSVVEIDPRLPALYEEVERLVGIDGPREKI 176
>07_03_0708 - 20865786-20867153
Length = 455
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -3
Query: 214 PCTRCTKYSNTAPIWIPVRGE*KSSASCRG 125
PCTRC AP+ P R S C G
Sbjct: 121 PCTRCFPRPTPAPVLQPARSSTFSRLPCNG 150
>07_03_0363 +
17225472-17226778,17226910-17226917,17227313-17227488,
17227822-17227882,17227955-17228053,17228155-17228249,
17228411-17228482,17228668-17228735,17228934-17229390,
17229486-17229596
Length = 817
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 243 SPEAS*PTSFLVRVAPNIPI-PPQSGYPSVASKNLRRPVVAAGQTC 109
SP +S P S + + + + PPQ Y S N+R AG C
Sbjct: 526 SPTSSPPPSAIQELRATVRVLPPQDSYTSTLRNNVRSRAWGAGIGC 571
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 135 DAEDFYSPRTGIQIGAVLE 191
D E++YSP GI+ GAVL+
Sbjct: 14 DEEEYYSPFLGIEKGAVLQ 32
>01_06_0521 +
30001662-30001752,30001883-30001999,30002099-30002229,
30002320-30002370,30002639-30002689,30002864-30003007,
30003082-30003224,30003376-30003448,30003540-30003635,
30003737-30003835,30003905-30003958,30004032-30004155,
30004420-30004544,30004720-30004842,30004948-30005028
Length = 500
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 234 AS*PTSFLVRVAPNIPIPPQSGYPSVASKNLRRPVVAAGQ 115
A+ P SFL AP + +PP + P A P AA Q
Sbjct: 6 AAAPASFLAPPAPPLLLPPSTPTPRGAFSAKASPAAAAAQ 45
>11_04_0096 +
13435988-13436803,13436880-13437053,13437673-13437834,
13438548-13438690,13439059-13439134,13439231-13439403,
13439482-13439563,13439949-13440026,13440369-13440461,
13441026-13441187,13441225-13441530,13442265-13442369,
13443097-13443243
Length = 838
Score = 27.1 bits (57), Expect = 4.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 5 GTRRHSHVSRLVSIGRYSLPQPGXGQARQE--NPQFQHVCPAATTGRRRFLL 154
GT+ S L +G +PG + Q+ PQ + P AT G RFLL
Sbjct: 210 GTKEISKEQILDQLGLAGAGRPGFPKMPQQPGGPQINGMHPPATAGVTRFLL 261
>11_01_0324 - 2428035-2428514
Length = 159
Score = 27.1 bits (57), Expect = 4.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 176 WGGIGIFGATRTRNDVG 226
WGG+G++ T RN VG
Sbjct: 120 WGGVGVYRETGKRNGVG 136
>05_07_0212 +
28434612-28435931,28436012-28436044,28436557-28436670,
28436767-28437102,28437221-28437283,28437364-28437519,
28437650-28437715,28439074-28439310,28439403-28439678,
28440060-28440248,28440459-28440620
Length = 983
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 201 APNIPIPPQSGYPSVASKNLRRPVVA 124
AP P+PP PSV + RRPV A
Sbjct: 209 APTKPVPPLLTKPSVVAPPPRRPVKA 234
>03_06_0146 - 31976538-31978643,31978653-31978751
Length = 734
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 194 FGATRTRNDVG*EASGED*GNHSELIENVSTSIPNAAENEVDG 322
F AT+ ++G +ASG D S+ E+ + P+A + E G
Sbjct: 556 FDATQLGEEIGGDASGVDGEEPSDAGESDHDTAPDAGDGEAHG 598
>12_01_0974 - 9808192-9808455,9809023-9809172,9810892-9811488
Length = 336
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 123 RPRQDAEDFYSPRTGIQIGAVLEYLVQRVQGMMSVKKPQEKI 248
R R +DF S + ++I L L + V+ ++ + P+EKI
Sbjct: 135 RKRYQIDDFISEPSMVEIDPRLLALYEEVERLVGIDGPREKI 176
>06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791
Length = 507
Score = 26.6 bits (56), Expect = 5.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 124 GHDRTPKIFTRHGRVSRLGRYWNIW 198
GHD +P++ R+ + R W IW
Sbjct: 356 GHDLSPEVACEMYRLGVVNRVWGIW 380
>12_02_0781 +
23105554-23106855,23107191-23107511,23107581-23107667,
23107907-23108302,23108327-23108500,23108600-23108764,
23108857-23109151,23109319-23109446,23109681-23109986,
23110531-23110591,23110676-23110915,23111251-23111372
Length = 1198
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 147 FYSPRTGIQIGAVLEYLVQRVQGMMSVKKPQEKIEGIILN*LRMCLHR 290
F + R G+Q+ ++L + R Q +S E G I+N L + +R
Sbjct: 123 FRTRRVGVQVRSLLSAAIYRKQQKLSCSASTEHSSGEIMNYLMVDTYR 170
>10_08_1022 + 22337332-22339398
Length = 688
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 66 NQAXARPVKKTLNFNMFVLRPRQDAEDFYSPRTG 167
+QA P ++ LNF+ F A F+ P TG
Sbjct: 334 SQAQQGPFRRELNFSDFASNGGAAAPPFFKPETG 367
>08_01_0686 + 6049563-6050900
Length = 445
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 119 PAATTGRRRFLLATDGYPDWGGIGIF 196
P +TGRRR L TD + G G+F
Sbjct: 106 PPVSTGRRRRLFLTDFVRNAAGAGLF 131
>11_02_0073 -
8020401-8020512,8020594-8020679,8020761-8020921,
8021196-8021400,8021664-8021697,8022352-8022422,
8023363-8023542,8023625-8023765,8023859-8023975,
8024074-8024469
Length = 500
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 219 SFLVRVAPNIPIPPQSGY 166
SF APN P+PP GY
Sbjct: 401 SFKPAGAPNFPLPPYGGY 418
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 252 PQSSPEAS*PTSFLVRVAPNIPIPPQSGYPSVA 154
P SP S +SF P P P YPS+A
Sbjct: 114 PNPSPSISPSSSFHHHPEPPSPSPSAPSYPSIA 146
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 25.8 bits (54), Expect = 9.8
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = -1
Query: 321 PSTSFSAAFGIDVDT-FSINSE*FPQSSPEAS*PTSFLVRVAPNIPIPPQSGYPS---VA 154
P T FSA G +++ + P + P P S P P PP P V+
Sbjct: 304 PRTRFSAGSGAEMNKQMASPPSNPPPAPPPPPPPPSRFNNTTPKPPPPPPPPEPPTGPVS 363
Query: 153 SKNLRRPVVAAG 118
++ L RP+ A G
Sbjct: 364 ARRLLRPLPAEG 375
>03_06_0195 + 32256771-32258792
Length = 673
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 194 FGATRTRNDVG*EASGED*GNHSELIENVSTSIPNAAENEVDG 322
F T+ ++G +ASG D S+ E+ + P+A + E G
Sbjct: 498 FDGTQLGEEIGGDASGADEEEPSDAGESDHDTAPDAGDGEAHG 540
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,743,558
Number of Sequences: 37544
Number of extensions: 224366
Number of successful extensions: 678
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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