Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30529X
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10832| Best HMM Match : ArsD (HMM E-Value=7.8)                      28   1.9  
SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_13663| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)               27   4.4  
SB_49869| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  

>SB_10832| Best HMM Match : ArsD (HMM E-Value=7.8)
          Length = 189

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 321 PSTSFSAAFGI-DVDTFSINSE*FPQSSPEAS*PTSFLVRVAPNIPIPPQSGYPSV 157
           P +  S+  G+  ++T  I ++  PQ++P    PT  L    PN P+ PQSG  +V
Sbjct: 7   PISQISSVGGVATLNTAQIQAKTSPQTTPVGQ-PTPIL----PNTPMSPQSGMTTV 57


>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 89   QENPQFQHVCPAATTGRRRFLLATDGYPDW-GGIGIFGATRTR 214
            + N   Q    A    R+R L AT G P W G  G  G T TR
Sbjct: 1283 EANRVAQQAVQALKKSRQRCLGATSGIPTWTGASGSSGFTDTR 1325


>SB_13663| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
          Length = 356

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 136 TPKIFTRHGRVSRLGRYWNIWCNAYKE*C 222
           TPK F   G  + LG+ W IW + ++  C
Sbjct: 10  TPKAFDCIGEPATLGQRWTIWKSEFELYC 38


>SB_49869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 272 ENVSTSIPNAAENEVDGVPESK 337
           ENVST IP A  N  DG  + +
Sbjct: 120 ENVSTGIPTAQGNRTDGYEDDQ 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,309,397
Number of Sequences: 59808
Number of extensions: 258101
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)