Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30529X
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    31   0.23 
Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AF038612-3|AAB92045.2|  432|Caenorhabditis elegans Hypothetical ...    26   6.6  
AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -1

Query: 249 QSSPEAS*PTSFLVRVAPNIPIPPQSGYPSVASKNLRRPV-VAAGQT 112
           Q +P A+ P++  +RV P  P   ++G P+ A +  R+P+ +A  QT
Sbjct: 313 QRAPAATRPSTSAIRVTPIAPNVVRNGAPTTAQQAPRKPIGIARPQT 359


>Z99942-1|CAB17068.2|  454|Caenorhabditis elegans Hypothetical
           protein H13N06.2 protein.
          Length = 454

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 294 GIDVDTFSINSE*FPQSSPEAS*PTSFLVRVAPNIPIPPQSGYPSVAS 151
           G+D+  F       P  SP  S  T+  V    ++P+PP +  PS++S
Sbjct: 50  GVDISNFRTAR---PHQSPGTSPVTTTPVAPTNSLPMPPGTSTPSLSS 94


>AF038612-3|AAB92045.2|  432|Caenorhabditis elegans Hypothetical
           protein F13B6.3 protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 252 PQSSPEAS*P-TSFLVRVAPNIPIPPQSGYPSVAS 151
           P ++PE + P T+F    APN   PP S  P V +
Sbjct: 361 PTTAPECTCPPTTFPTTRAPNTACPPVSTCPPVVT 395


>AC006834-5|AAF40007.1|  451|Caenorhabditis elegans Hypothetical
           protein ZK973.3 protein.
          Length = 451

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 150 YSPRTGIQIGAVLEYLVQRVQGMMSVKKP 236
           Y P++G  +  V E L  R +G    KKP
Sbjct: 357 YVPKSGTSLRQVREQLKDRARGEQKTKKP 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,801,084
Number of Sequences: 27780
Number of extensions: 183505
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)