Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30529X
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.15 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   3.3  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   7.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   9.9  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.8 bits (54), Expect = 0.15
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 252 PQSSPEAS*PTSFLVRVAPNIPIPPQSGYPSVASKNLRRPVV 127
           PQ SP+ + P  + +     I   P   YPS +S  L++P +
Sbjct: 414 PQVSPDRTSPMEYRLYNPALIQSQPSPQYPSTSSHILQQPSI 455


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -1

Query: 252 PQSSPEAS*PTSFLVRVAPNIPIPPQSGYPSVASKNLRRPVVAAGQT 112
           PQ +P    P S++      +  PP  G PS     + +P +   QT
Sbjct: 823 PQQNPYMFLPVSYMSTTMAGVIYPPVIGTPSTGM--MYKPFLIPEQT 867


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 136 SCRGRRTNMLKLRVFLT 86
           SC GR+  MLKL++ L+
Sbjct: 487 SCVGRKYAMLKLKIVLS 503


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
 Frame = +2

Query: 47   GRYSLPQPG---XGQAR-QENPQFQHV-CPAATTG 136
            GRY+ PQP     GQA+ Q  PQ Q    P   TG
Sbjct: 995  GRYTPPQPANAQQGQAQAQAKPQSQEANKPKPATG 1029


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 15  VTVMSRVLLALVAIAC 62
           VT +  +LLALVA+ C
Sbjct: 140 VTSLGLLLLALVAVLC 155


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 15  VTVMSRVLLALVAIAC 62
           VT +  +LLALVA+ C
Sbjct: 111 VTSLGLLLLALVAVLC 126


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 246 SSPEAS*PTSFLVRVAP 196
           SSP  S P+SF   V+P
Sbjct: 89  SSPSPSSPSSFFSSVSP 105


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 134 LSWPQDKHVEIEGFLDGPGXCLV 66
           +SWP  K   +EG L   G  +V
Sbjct: 103 MSWPVKKEAVVEGDLVLGGLMMV 125


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 70  RQXPGPSRKPSISTCLSCG 126
           R+  GP+ +     CL CG
Sbjct: 173 RKKKGPTPRQQEELCLVCG 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,656
Number of Sequences: 438
Number of extensions: 2068
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)