Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30529X
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66310.1 68418.m08360 kinesin motor family protein contains P...    27   2.7  
At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kina...    27   4.7  
At1g52855.1 68414.m05976 expressed protein                             26   6.3  
At1g77480.2 68414.m09023 nucellin protein, putative similar to n...    26   8.3  
At1g77480.1 68414.m09022 nucellin protein, putative similar to n...    26   8.3  
At1g07330.1 68414.m00781 hypothetical protein                          26   8.3  

>At5g66310.1 68418.m08360 kinesin motor family protein contains Pfam
            domain, PF00225: Kinesin motor domain
          Length = 1063

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -3

Query: 130  RGRRTNMLKLRVFLTGLAXAWLRQAIATNANKTRDMTVTACAR 2
            RG + + L L V L  L   ++R++ A N+N   +MT+ +C R
Sbjct: 916  RGDQKDCLYLEVELRRLK--YIRESFAQNSNDGNNMTLISCTR 956


>At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kinase
            family protein low similarity to SP|Q9Z1T6 FYVE
            finger-containing phosphoinositide kinase (EC 2.7.1.68)
            (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
            (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
            profile PF01504: Phosphatidylinositol-4-phosphate
            5-Kinase
          Length = 1456

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 197  GATRTRNDVG*EASGED*GNHSELIENVSTSIPNAAENEVDGVPESKMP 343
            G TR  ND     SG + G  + L+E+    I  A+  + D + ES +P
Sbjct: 920  GMTRYENDNKVSDSGSNGGIDTPLVEHKDIPIAGASVGDNDQMAESYVP 968


>At1g52855.1 68414.m05976 expressed protein
          Length = 68

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +1

Query: 94  KPSISTCLSCGHDRTPKIFTRHGRVSRLGRYWNIW 198
           KP+  TC  CGH  +        R   +  YW  W
Sbjct: 18  KPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSW 52


>At1g77480.2 68414.m09023 nucellin protein, putative similar to
           nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare]
           (nucellin: similar to aspartic protease and its specific
           expression in nucellar cells during degeneration)
          Length = 432

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -2

Query: 188 QYRPNLDTRPWRVKIFGVLSWPQDKHVEIEGFLDGPGXCLVEAGYSD 48
           QY+PN +T P    +   L  PQD+        D    C  E GYSD
Sbjct: 109 QYKPNHNTLPCSHILCSGLDLPQDRPC-----ADPEDQCDYEIGYSD 150


>At1g77480.1 68414.m09022 nucellin protein, putative similar to
           nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare]
           (nucellin: similar to aspartic protease and its specific
           expression in nucellar cells during degeneration)
          Length = 466

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -2

Query: 188 QYRPNLDTRPWRVKIFGVLSWPQDKHVEIEGFLDGPGXCLVEAGYSD 48
           QY+PN +T P    +   L  PQD+        D    C  E GYSD
Sbjct: 109 QYKPNHNTLPCSHILCSGLDLPQDRPC-----ADPEDQCDYEIGYSD 150


>At1g07330.1 68414.m00781 hypothetical protein
          Length = 685

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -1

Query: 297 FGIDVDTFSINSE*FPQSSPEAS*PTSFLVRVAPNIPIPPQSGYPSVASKNLRRPVVA 124
           FG+D + + ++    P+S+P    PT    +   +IP  PQ   P+++  + ++   A
Sbjct: 219 FGLDQENYIVDGLQMPESAPSVLLPT----KNPFDIPYDPQEEKPNLSGDSFQQEFAA 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,320,080
Number of Sequences: 28952
Number of extensions: 170240
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)