Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30527X
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    95   4e-21
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    95   4e-21
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   0.74 
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   3.9  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   5.2  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    24   9.1  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 94.7 bits (225), Expect = 4e-21
 Identities = 41/53 (77%), Positives = 46/53 (86%)
 Frame = +3

Query: 93  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDW 251
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DW
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDW 53



 Score = 55.2 bits (127), Expect = 3e-09
 Identities = 24/32 (75%), Positives = 30/32 (93%)
 Frame = +1

Query: 280 TVQNRQAQIAVVPSAAALIIRALKEPPRDRKK 375
           T+QNRQA ++VVPSA+AL+I+ALKEP RDRKK
Sbjct: 63  TIQNRQAAVSVVPSASALVIKALKEPARDRKK 94


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 94.7 bits (225), Expect = 4e-21
 Identities = 41/53 (77%), Positives = 46/53 (86%)
 Frame = +3

Query: 93  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDW 251
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DW
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDW 53



 Score = 55.2 bits (127), Expect = 3e-09
 Identities = 24/32 (75%), Positives = 30/32 (93%)
 Frame = +1

Query: 280 TVQNRQAQIAVVPSAAALIIRALKEPPRDRKK 375
           T+QNRQA ++VVPSA+AL+I+ALKEP RDRKK
Sbjct: 63  TIQNRQAAVSVVPSASALVIKALKEPARDRKK 94


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 375 LFTITRRLLKGSDDKGCCRGNNSYLGLSVLNCSAVTV 265
           +FT+ R  LK   +   CR N +  GLS   C+A +V
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANSV 841


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 172 DDVAPTSPPTHRKFTILI 119
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 78  SSTLYYNNVKSKWMSLDSASL 16
           ++ L+Y +V S+W S D ASL
Sbjct: 330 AAKLFYMDVASEWSSSDMASL 350


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 297 LSVLNCSAVTVILRPTSHLWPWQC 226
           +S +N   V  I+ PTSH W  +C
Sbjct: 350 VSQVNFHIVPFIMDPTSHNWVERC 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,528,595
Number of Sequences: 5004
Number of extensions: 29193
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)