Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30527X
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 83 9e-17
02_05_0416 + 28791512-28792012 83 9e-17
10_01_0190 + 2107854-2108135,2108215-2109272,2110561-2110681 28 2.1
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 2.8
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 3.7
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 4.9
11_06_0541 + 24771145-24775479 26 8.6
05_01_0358 + 2808627-2809847 26 8.6
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 26 8.6
>04_04_1026 + 30214437-30214937
Length = 166
Score = 82.6 bits (195), Expect = 9e-17
Identities = 38/54 (70%), Positives = 44/54 (81%), Gaps = 1/54 (1%)
Frame = +3
Query: 93 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DW 251
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DW
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDW 54
Score = 57.6 bits (133), Expect = 3e-09
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +1
Query: 280 TVQNRQAQIAVVPSAAALIIRALKEPPRDRKK 375
TVQNRQA+++VVPSAAAL+I+ALKEP RDRKK
Sbjct: 64 TVQNRQAKVSVVPSAAALVIKALKEPERDRKK 95
>02_05_0416 + 28791512-28792012
Length = 166
Score = 82.6 bits (195), Expect = 9e-17
Identities = 38/54 (70%), Positives = 44/54 (81%), Gaps = 1/54 (1%)
Frame = +3
Query: 93 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DW 251
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DW
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDW 54
Score = 57.6 bits (133), Expect = 3e-09
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +1
Query: 280 TVQNRQAQIAVVPSAAALIIRALKEPPRDRKK 375
TVQNRQA+++VVPSAAAL+I+ALKEP RDRKK
Sbjct: 64 TVQNRQAKVSVVPSAAALVIKALKEPERDRKK 95
>10_01_0190 + 2107854-2108135,2108215-2109272,2110561-2110681
Length = 486
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 289 FELFSCHSDLETYQSLVALAMSSPTFLGDRPRGPILGAK 173
F L S S + Y S V +A SP+ D+P + G K
Sbjct: 406 FNLVSWESRIPPYTSFVHMARFSPSLAEDKPESHLSGRK 444
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 90 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 218
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 132 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 233
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 243 LWPWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 136
+W C H P+ E D E R GP L R I+
Sbjct: 1182 MWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
>11_06_0541 + 24771145-24775479
Length = 1444
Score = 26.2 bits (55), Expect = 8.6
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -3
Query: 310 QLSGLVCFELFSCHSDLETYQS 245
+LS ++C+ L+ CH + E++ S
Sbjct: 270 KLSDILCYILYQCHMEKESWHS 291
>05_01_0358 + 2808627-2809847
Length = 406
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 377 CFLRSRGGSLRALMIRAAAEGTTAIWACLF 288
C L +G SLRA + AAA+G + A L+
Sbjct: 249 CELSRQGRSLRAAHVVAAADGVDLLLAVLY 278
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 26.2 bits (55), Expect = 8.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 339 DDKGCCRGNNSYL 301
+DKGCC+G N +L
Sbjct: 719 EDKGCCKGLNEFL 731
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,647,433
Number of Sequences: 37544
Number of extensions: 212126
Number of successful extensions: 493
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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