Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30527X
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   1e-23
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)                     27   3.8  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_57115| Best HMM Match : HALZ (HMM E-Value=7.6)                      27   6.7  
SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)            27   6.7  
SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     26   8.8  
SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  105 bits (252), Expect = 1e-23
 Identities = 47/53 (88%), Positives = 49/53 (92%)
 Frame = +3

Query: 93  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDW 251
           MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT DW
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDW 53



 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 25/32 (78%), Positives = 32/32 (100%)
 Frame = +1

Query: 280 TVQNRQAQIAVVPSAAALIIRALKEPPRDRKK 375
           T+QNRQA+++VVPSA++LII+ALKEPPRDRKK
Sbjct: 63  TIQNRQAKVSVVPSASSLIIKALKEPPRDRKK 94


>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
          Length = 646

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 221
           P+     +L+C G E   TSS+ P +G LG   K  G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 256  TYQSLVALAMSSPTFLGDRPRGPILGAKDDVAP 158
            T  +L      S TF   +P GP+ G K DVAP
Sbjct: 947  TLMALPIFEAISGTFTAVQPDGPLRGEKLDVAP 979


>SB_57115| Best HMM Match : HALZ (HMM E-Value=7.6)
          Length = 209

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 359 GGSLRALMIRAAAEGTTAIWACLF*TVQLSQ 267
           GG L+ L++     G T+ +ACL+  V  SQ
Sbjct: 59  GGDLKFLLLSMGLSGATSDYACLWCIVHKSQ 89


>SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 359 GGSLRALMIRAAAEGTTAIWACLF*TVQLSQ 267
           GG L+ L++     G T+ +ACL+  V  SQ
Sbjct: 459 GGDLKFLLLSMGLSGATSDYACLWCIVHKSQ 489


>SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)
          Length = 711

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 359 GGSLRALMIRAAAEGTTAIWACLF*TVQLSQ 267
           GG L+ L++     G T+ +ACL+  V  SQ
Sbjct: 459 GGDLKFLLLSMGLSGATSDYACLWCIVHKSQ 489


>SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 920

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 256 TYQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILISFGS 107
           T+   V ++  S   L     GP L  +D  AP+  PTH   T   S G+
Sbjct: 665 TFTPQVLVSSPSTQALPTSVSGPHLPVRDTQAPSHHPTHPSLTRRASDGN 714


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 153  EVGATSSLAPKIGPLGLSPKKVGDDIAKATSDW 251
            E+G T +    +  LG  PK V +D     +DW
Sbjct: 1793 ELGITDAEGNYVDSLGADPKAVSNDYVGYATDW 1825


>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 167 CGTDFPADTSQIHDFNFIWVKLRGHFVDY 81
           CGTDF ++ +Q    NF  V+  G  V Y
Sbjct: 372 CGTDFSSEQTQGPVINFNVVRANGECVGY 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,680,280
Number of Sequences: 59808
Number of extensions: 223717
Number of successful extensions: 459
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)