Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30527X
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   105   8e-24
Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z93391-5|CAB07686.3|  387|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U55372-3|ABF71724.1|  142|Caenorhabditis elegans Hypothetical pr...    26   7.8  
AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    26   7.8  
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    26   7.8  
AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    26   7.8  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  105 bits (253), Expect = 8e-24
 Identities = 46/53 (86%), Positives = 50/53 (94%)
 Frame = +3

Query: 93  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDW 251
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DW
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDW 53



 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 24/32 (75%), Positives = 29/32 (90%)
 Frame = +1

Query: 280 TVQNRQAQIAVVPSAAALIIRALKEPPRDRKK 375
           T+QNR A+I VVPSAA+LI++ LKEPPRDRKK
Sbjct: 63  TIQNRVAKIDVVPSAASLIVKELKEPPRDRKK 94


>Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical
           protein M01G12.6 protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 190 VLLVCLLKRWVMTL 231
           +L++CLLKRW M L
Sbjct: 180 ILMICLLKRWKMNL 193


>Z93391-5|CAB07686.3|  387|Caenorhabditis elegans Hypothetical
           protein W04G5.6 protein.
          Length = 387

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 6   VQAVDLRNPNSSIWI*RYYSIKLN*VINKMPPKFDPNEIKIVNLRCVG 149
           V  +DL  P+SS+        K+  ++N+   + DP  + I N + +G
Sbjct: 36  VNLIDLEEPSSSLTPFDQVKAKIESLVNENHLEIDPKNLTISNEQSIG 83


>U55372-3|ABF71724.1|  142|Caenorhabditis elegans Hypothetical
           protein C02G6.3 protein.
          Length = 142

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 378 LLFTITRRLLKGSDDKGCCRGNNSYLGLSVLNCSAVT 268
           L  TI+  L  G  +KGCC+   S++  S +N S+++
Sbjct: 33  LTVTISCPLASGCCEKGCCKLPVSFITNSHMNTSSLS 69


>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 144 VGGEVGATSSLAPKIG 191
           VGG VGATSS AP  G
Sbjct: 42  VGGSVGATSSAAPSGG 57


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 144 VGGEVGATSSLAPKIG 191
           VGG VGATSS AP  G
Sbjct: 32  VGGSVGATSSAAPSGG 47


>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 144 VGGEVGATSSLAPKIG 191
           VGG VGATSS AP  G
Sbjct: 32  VGGSVGATSSAAPSGG 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,624,064
Number of Sequences: 27780
Number of extensions: 168061
Number of successful extensions: 402
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)