Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30527X
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   3.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   3.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   3.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   3.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 116 IWVKLRGHFVDYLVQLYTIITLNPN-G*VWIPQVYRL 9
           +W K   +   Y+  LYT +   P+   + +P +Y +
Sbjct: 129 LWAKNNINEAQYIYSLYTAVITRPDTKFIQLPPLYEM 165


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 116 IWVKLRGHFVDYLVQLYTIITLNPN-G*VWIPQVYRL 9
           +W K   +   Y+  LYT +   P+   + +P +Y +
Sbjct: 129 LWAKNNINEAQYIYSLYTAVITRPDTKFIQLPPLYEM 165


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 35  VWIPQVYRL 9
           +W+PQ YRL
Sbjct: 131 IWVPQKYRL 139


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 35  VWIPQVYRL 9
           +W+PQ YRL
Sbjct: 131 IWVPQKYRL 139



 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 99  PKFDPNEIKIVNLRCVGGEVGATSSLA 179
           P   PN  K++      GE G  +SLA
Sbjct: 588 PDPXPNTCKVIASSVSAGEEGLGNSLA 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,790
Number of Sequences: 438
Number of extensions: 2046
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)