Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30527X
(378 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 81 2e-16
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 81 2e-16
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 81 2e-16
At1g43800.1 68414.m05046 acyl-[acyl-carrier-protein] desaturase,... 28 2.4
At3g19720.2 68416.m02498 dynamin family protein identical to cDN... 27 3.1
At3g19720.1 68416.m02497 dynamin family protein identical to cDN... 27 3.1
At5g62170.1 68418.m07804 expressed protein various predicted pro... 27 4.1
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 27 4.1
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 27 4.1
At5g60090.1 68418.m07534 protein kinase family protein contains ... 26 9.6
At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family pr... 26 9.6
At1g25375.1 68414.m03149 metallo-beta-lactamase family protein 26 9.6
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 81.0 bits (191), Expect = 2e-16
Identities = 37/54 (68%), Positives = 45/54 (83%), Gaps = 1/54 (1%)
Frame = +3
Query: 93 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DW 251
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +W
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEW 54
Score = 57.2 bits (132), Expect = 3e-09
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +1
Query: 280 TVQNRQAQIAVVPSAAALIIRALKEPPRDRKK 375
TVQNRQA++ VVPSAAAL+I+ALKEP RDRKK
Sbjct: 64 TVQNRQAKVTVVPSAAALVIKALKEPERDRKK 95
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 81.0 bits (191), Expect = 2e-16
Identities = 37/54 (68%), Positives = 45/54 (83%), Gaps = 1/54 (1%)
Frame = +3
Query: 93 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DW 251
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +W
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEW 54
Score = 57.2 bits (132), Expect = 3e-09
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +1
Query: 280 TVQNRQAQIAVVPSAAALIIRALKEPPRDRKK 375
TVQNRQA++ VVPSAAAL+I+ALKEP RDRKK
Sbjct: 64 TVQNRQAKVTVVPSAAALVIKALKEPERDRKK 95
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 81.0 bits (191), Expect = 2e-16
Identities = 37/54 (68%), Positives = 45/54 (83%), Gaps = 1/54 (1%)
Frame = +3
Query: 93 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DW 251
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +W
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEW 54
Score = 57.2 bits (132), Expect = 3e-09
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +1
Query: 280 TVQNRQAQIAVVPSAAALIIRALKEPPRDRKK 375
TVQNRQA++ VVPSAAAL+I+ALKEP RDRKK
Sbjct: 64 TVQNRQAKVTVVPSAAALVIKALKEPERDRKK 95
>At1g43800.1 68414.m05046 acyl-[acyl-carrier-protein] desaturase,
putative / stearoyl-ACP desaturase, putative similar to
Acyl-[acyl-carrier protein] desaturase from Lupinus
luteus GI:4704824, Asclepias syriaca GI:1762436, Ricinus
communis SP|P22337; contains Pfam profile PF03405 Fatty
acid desaturase
Length = 391
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 271 HSDLETYQSLVALAMSSP-TFLGDRPRGP 188
H L ++ + A M SP TFL RPRGP
Sbjct: 4 HKSLLSFTTQWATLMPSPSTFLASRPRGP 32
>At3g19720.2 68416.m02498 dynamin family protein identical to cDNA
dynamin-like protein (ARC5) GI: 30349145; contains Pfam
profile PF00350: Dynamin family
Length = 741
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 280 FSCHSDLETYQSLVALAMSSPTFLGDRP 197
FSC SD+E + S A A+ S + LGD P
Sbjct: 240 FSCSSDVEVFLSPPASALDS-SLLGDSP 266
>At3g19720.1 68416.m02497 dynamin family protein identical to cDNA
dynamin-like protein (ARC5) GI: 30349145; contains Pfam
profile PF00350: Dynamin family
Length = 777
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 280 FSCHSDLETYQSLVALAMSSPTFLGDRP 197
FSC SD+E + S A A+ S + LGD P
Sbjct: 240 FSCSSDVEVFLSPPASALDS-SLLGDSP 266
>At5g62170.1 68418.m07804 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 703
Score = 27.1 bits (57), Expect = 4.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 264 ILRPTSHLWPWQCHHP 217
IL+P +L PW CH+P
Sbjct: 564 ILKPHINLKPWVCHYP 579
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 150 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 248
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 171 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 203
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 150 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 248
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 165 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 197
>At5g60090.1 68418.m07534 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 398
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 117 EIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDD 227
E+K++N G + + PK+ GL+ K V D+
Sbjct: 218 ELKVINRDVKAGNILLDADFVPKLTDFGLATKIVEDE 254
>At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family
protein / kinesin motor family protein kinesin,
Syncephalastrum racemosum, AJ225894
Length = 941
Score = 25.8 bits (54), Expect = 9.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 283 LFSCHSDLETYQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFT 128
L S +L S+VA ++ + L DRP + V+ +SP T R T
Sbjct: 35 LSSSSLNLPARTSIVAPGIAHSSRLKDRPSASSSSSSSSVSASSPSTRRSGT 86
>At1g25375.1 68414.m03149 metallo-beta-lactamase family protein
Length = 524
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 119 FIWVKLRGHFVDYLVQLYTIITLNPNG*VWIPQVYRLNV 3
F+ ++ G+ DY Y + L+PN V IP R+N+
Sbjct: 357 FLDIRAGGNMTDYFQSTYKFLELSPN--VVIPMHGRVNL 393
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,291,326
Number of Sequences: 28952
Number of extensions: 162391
Number of successful extensions: 376
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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