Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30526
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    32   0.081
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   3.0  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   9.3  

>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 31.9 bits (69), Expect = 0.081
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 439 PAYNEEKRLPPMLDETIEFLE 501
           PAYNE KR+  ML ET++ LE
Sbjct: 69  PAYNESKRIGNMLQETVDHLE 89


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +2

Query: 401 YLKKNLLA*V*LFLHIMKKKDC-----HPCWMKQLSSWRT 505
           YL  N L+      H +KK  C     HPC ++++ +WRT
Sbjct: 328 YLDSNPLSIQRTITHFIKKLVCNECSMHPCDIEEIIAWRT 367


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 565 SLLPSLTMIISYLYEGFSFVGSPRTQLFHPTWVAVFFLHYMQ 440
           SL  S+T I S  YE   +     +Q +   WV ++FL  +Q
Sbjct: 421 SLHLSITKIKSLFYERKEYTAKGISQPWTQLWVTLWFLSSLQ 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,203
Number of Sequences: 5004
Number of extensions: 41494
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)