Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30526
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853...    40   0.002
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522...    29   3.1  
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792...    27   9.6  
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791...    27   9.6  

>03_06_0489 -
           34284301-34284336,34285104-34285227,34285307-34285371,
           34285472-34285555,34285661-34285789,34285887-34285976,
           34286116-34286250,34286939-34286984,34287119-34287225,
           34287355-34287412,34287524-34287765
          Length = 371

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = +1

Query: 358 YNDYLTNTKLRFPSIXXXXXXXXXXXXPAYNEEKRLPPMLDETIEFLENR 507
           + D  +  K+R PSI            PAYNEE RLP  L ET+ +L+ R
Sbjct: 92  FEDPNSLNKVRCPSIYDPAEKYISLIIPAYNEEHRLPEALTETLNYLKQR 141



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 522 SYKYEIIIVSDGSKDSTLK 578
           S+ YE++IV DGS D T K
Sbjct: 147 SFTYEVLIVDDGSTDHTSK 165


>02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,
            5222445-5222793,5223189-5223510,5223621-5224123,
            5224486-5224578,5224708-5224759,5224837-5225129,
            5225208-5225630,5225734-5226070,5226185-5226220,
            5226272-5226589,5227465-5228450
          Length = 1637

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 316  DTYPVVERYKDEETYND 366
            ++YP VERY D + YND
Sbjct: 1409 ESYPEVERYSDNDIYND 1425


>11_02_0063 +
           7916048-7917135,7917225-7918690,7920177-7920238,
           7921808-7922407
          Length = 1071

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 519 GFLLSVLQELNCFIQHGWQSFF 454
           G + + LQ++N   QHGWQ  F
Sbjct: 601 GLIGTTLQKINHIRQHGWQELF 622


>11_02_0062 -
           7909343-7909413,7909509-7910974,7911064-7912088,
           7912300-7912809,7913418-7913441,7913617-7913673
          Length = 1050

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 519 GFLLSVLQELNCFIQHGWQSFF 454
           G + + LQ++N   QHGWQ  F
Sbjct: 777 GLIGTTLQKINHIRQHGWQELF 798


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,840,904
Number of Sequences: 37544
Number of extensions: 207312
Number of successful extensions: 336
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)