Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30525
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    69   2e-12
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    29   1.8  
01_01_0256 - 2083973-2084816,2084922-2086093                           29   2.4  
12_02_0735 - 22636835-22639502,22639755-22640734                       27   9.7  
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193     27   9.7  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    27   9.7  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 30/51 (58%), Positives = 40/51 (78%)
 Frame = +1

Query: 103 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALE 255
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLE 51


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +1

Query: 67  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 189
           G+R+LA+     V+K +     S  +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289


>01_01_0256 - 2083973-2084816,2084922-2086093
          Length = 671

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 295 PEPMLVIRSRTLMPPRLWRTDLANMALHLQ-PPLSRWWKFSHQLRQHHHP 149
           P P + ++   L  P L+RT  A   +     P      + H ++ HHHP
Sbjct: 564 PIPQMAVKQPELQQPGLYRTTAAPTPVPASNAPAYAGMGYHHVIQTHHHP 613


>12_02_0735 - 22636835-22639502,22639755-22640734
          Length = 1215

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -3

Query: 287 DVGDQVTDIDASKALANRP--GQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*THANS 114
           D  D VTD D  +A+++     Q   TS A  F +V       A ++     AE  HA  
Sbjct: 209 DESDSVTDDDDDEAVSSSEERDQLPLTSMARKFSVVHSMKVPGAAANGNGKPAEFDHARW 268

Query: 113 AFDT 102
            F+T
Sbjct: 269 LFET 272


>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
          Length = 516

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 287 DVGDQVTDIDASKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSST 147
           DVG +    DAS    +R G     S AAA +     SP +A +++T
Sbjct: 4   DVGAEDAAADASTGGGSRRGSVPGGSAAAASRAAPPASPTSAAAATT 50


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 175 HQLRQHHHPPG*EQSKH 125
           HQ R+HHHPP  +   H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,285,393
Number of Sequences: 37544
Number of extensions: 213033
Number of successful extensions: 547
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)